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[185409_at]

Description Y57A10B.2 /REP_DB=WormBase Gene ID /WP=CE20323 /TR=Q9XWH9 /GB=CAA21689.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 83.5
(3)
A 		20.5
(-3)
A 		34.6
(-1.7)
A 		53.2
(0.1)
A 		63
B 9
(-3)
A 		47.5
(0.1)
A 		22.4
(-1.9)
A 		83.6
(3)
A 		75
C 66
(3)
A 		24.8
(-3)
A 		51.9
(0.9)
A 		55.7
(1.5)
A 		41
avr 52.8
(0.9) 		30.9
(-3) 		36.3
(-2) 		64.2
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 18.4
(-3)
A 		61
(1)
A 		48.5
(-0.2)
A 		73.2
(2.1)
A 		19
(-2.9)
A 		82.4
(3)
A 		64
B 10.7
(-3)
A 		36.8
(-0.8)
A 		10.9
(-3)
A 		50.6
(0.4)
A 		81.1
(3)
A 		30.5
(-1.3)
A 		70
C 45.5
(-2)
A 		61.2
(-1.1)
A 		29.6
(-3)
A 		105.8
(1.6)
A 		128.7
(3)
A 		37.7
(-2.5)
A 		99
avr 24.9
(-3) 		53
(0.3) 		29.7
(-2.4) 		76.5
(3) 		76.3
(3) 		50.2
(-0.1) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 30.4
(3)
A 		4.5
(-3)
A 		9
(-2)
A 		7.8
(-2.2)
A 		26
B 2.9
(-3)
A 		11.7
(0.5)
A 		5.2
(-2.1)
A 		17.8
(3)
A 		15
C 21.9
(3)
A 		7.1
(-3)
A 		18.1
(1.5)
A 		9.4
(-2.1)
A 		15
avr 18.4
(3) 		7.8
(-3) 		10.8
(-1.3) 		11.7
(-0.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 3.4
(-3)
A 		21.7
(3)
A 		10.6
(-0.6)
A 		18.6
(2)
A 		5.7
(-2.2)
A 		20.1
(2.5)
A 		18
B 3.7
(-2.8)
A 		12.3
(-1.1)
A 		2.6
(-3)
A 		13.4
(-0.9)
A 		32.9
(3)
A 		11.4
(-1.3)
A 		30
C 16.9
(-1.3)
A 		18.7
(-1)
A 		7.5
(-3)
A 		21.3
(-0.6)
A 		41.6
(3)
A 		12.6
(-2.1)
A 		34
avr 8
(-2.7) 		17.6
(0.2) 		6.9
(-3) 		17.8
(0.3) 		26.7
(3) 		14.7
(-0.6) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185409_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2716
Sequence Type Exemplar sequence
Representative Public ID Y57A10B.2 NCBI
Target Description Y57A10B.2 /REP_DB=WormBase Gene ID /WP=CE20323 /TR=Q9XWH9 /GB=CAA21689.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064224 NCBI Caenorhabditis elegans Y57A10B.2 (Y57A10B.2) mRNA, complete cds. 11/11 None
GENEFINDER00000034321 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12358865:12382751:-1 9/11 None
Y57A10B.2 ENSEMBL cdna:known chromosome:CEL140:II:12373425:12379414:-1 gene:Y57A10B.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12373421-12379411(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10B.2
Entrez Gene 190343 Entrez gene
SwissProt Q9XWH9 EMBL-EBI
WormBase CE20323 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21688 Hypothetical protein Y57A10B.1 [Caenorhabditis elegans] ref|NP_496624.2| Y57A10B.1 [Caenorhabditis elegans] 0.0
blast CAE73485 Hypothetical protein CBG20937 [Caenorhabditis briggsae] 0.0
blast CAA21689 Hypothetical protein Y57A10B.2 [Caenorhabditis elegans] ref|NP_496625.1| Y57A10B.2 [Caenorhabditis elegans] 5.0E-57
blast CAA21689 Hypothetical protein Y57A10B.2 [Caenorhabditis elegans] ref|NP_496625.1| Y57A10B.2 [Caenorhabditis elegans] 3.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.9E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034321 3 19-41,516-538,622-644
Sequence
Target Sequence 
>C. ELEGANS:185409_AT
tatgggtttcgaagacctacaactagttttgctagagcgaaaattcttttaaaaattcta
ttgagttttaaaatttcatacaacttcgaaaaaacaatcctaaagttctacaaaatttca
caaaaaaaacatctaaaatctaatttcaaggccacaaacccctccgcctacgcctcaatt
attcgattgttcccttttttccaatttttcttttttctagaagttcaaaattgctcaaca
cactttgtgacaagttctgcaacggcttctccttcgtcttcgtcatcgtcttcttcagaa
tacaaaaaaaaggtgaaaagattaagctcaaacccattatcatcttcaacatcatcatct
gaaccgtccacgtcaaccaggaaacgatcgattttccatgagaagcctcaatttgttgta
cttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGGGTTTCGAAGACCTACAACTA 284 655 34 Antisense
GAAGACCTACAACTAGTTTTGCTAG 698 335 44 Antisense
TCTAATTTCAAGGCCACAAACCCCT 692 563 172 Antisense
CGCCTACGCCTCAATTATTCGATTG 698 255 198 Antisense
AAAATTGCTCAACACACTTTGTGAC 481 133 260 Antisense
TGTGACAAGTTCTGCAACGGCTTCT 152 557 279 Antisense
TTCGTCATCGTCTTCTTCAGAATAC 90 697 312 Antisense
GCTCAAACCCATTATCATCTTCAAC 284 301 359 Antisense
CCGTCCACGTCAACCAGGAAACGAT 73 263 397 Antisense
GATCGATTTTCCATGAGAAGCCTCA 2 419 419 Antisense
GAAGCCTCAATTTGTTGTACTTTTG 660 343 435 Antisense
Sequence Source Affymetrix Proprietary Database