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[185408_s_at]

Description F20H11.6 /REP_DB=WormBase Gene ID /WP=CE20703 /TR=Q9TXZ8 /GB=AAD34659.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 10.8
(-3)
A 		53.6
(3)
A 		47.4
(2.1)
A 		48.8
(2.3)
A 		43
B 30.3
(-1.2)
A 		67.8
(3)
A 		14
(-3)
A 		13.8
(-3)
A 		54
C 42.7
(-1.8)
A 		76.4
(1)
A 		28.7
(-3)
A 		100.1
(3)
A 		71
avr 27.9
(-3) 		65.9
(3) 		30
(-2.7) 		54.2
(1.2) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 54.6
(1.6)
A 		62.7
(3)
A 		33.1
(-2.1)
A 		27.6
(-3)
A 		50.7
(0.9)
A 		53.2
(1.4)
A 		35
B 45.6
(-0.8)
A 		68.2
(3)
A 		34.9
(-2.6)
A 		58
(1.3)
A 		32.4
(-3)
A 		54.6
(0.7)
A 		36
C 24
(-2.1)
A 		45.6
(3)
A 		34.8
(0.4)
A 		33.2
(0.1)
A 		33.8
(0.2)
A 		20.2
(-3)
A 		25
avr 41.4
(-1.3) 		58.8
(3) 		34.3
(-3) 		39.6
(-1.7) 		39
(-1.8) 		42.7
(-0.9) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 3.9
(-3)
A 		11.6
(2.4)
A 		12.4
(3)
A 		7.1
(-0.7)
A 		9
B 9.7
(-0.1)
A 		16.8
(3)
A 		3.2
(-2.9)
A 		2.9
(-3)
A 		14
C 14.1
(-1)
A 		22
(3)
A 		10
(-3)
A 		16.9
(0.4)
A 		12
avr 9.2
(-2.5) 		16.8
(3) 		8.5
(-3) 		9
(-2.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 10.1
(-1.8)
A 		22.3
(3)
A 		7.2
(-2.9)
A 		7
(-3)
A 		15.3
(0.3)
A 		13
(-0.6)
A 		15
B 15.9
(0.1)
A 		22.7
(3)
A 		8.5
(-3)
A 		15.4
(-0.1)
A 		13.2
(-1)
A 		20.3
(2)
A 		14
C 8.9
(-1.2)
A 		13.9
(3)
A 		8.8
(-1.3)
A 		6.7
(-3)
A 		10.9
(0.5)
A 		6.8
(-2.9)
A 		7
avr 11.6
(-1.2) 		19.6
(3) 		8.2
(-3) 		9.7
(-2.2) 		13.1
(-0.4) 		13.4
(-0.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185408_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7313
Sequence Type Exemplar sequence
Representative Public ID F20H11.6 NCBI
Target Description F20H11.6 /REP_DB=WormBase Gene ID /WP=CE20703 /TR=Q9TXZ8 /GB=AAD34659.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066055(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066055 NCBI Caenorhabditis elegans F20H11.6 (F20H11.6) mRNA, complete cds. 11/11 None
GENEFINDER00000039391 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6592997:6601022:-1 11/11 None
SNAP00000039388 ENSEMBL cdna:SNAP chromosome:CEL140:III:6593200:6601022:-1 11/11 None
F20H11.6 ENSEMBL cdna:known chromosome:CEL140:III:6598650:6601078:-1 gene:F20H11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6598651-6601021(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20H11.6
Entrez Gene 175935 Entrez gene
SwissProt Q9TXZ8 EMBL-EBI
WormBase CE20703 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD34659 Hypothetical protein F20H11.6 [Caenorhabditis elegans] ref|NP_498456.1| F20H11.6 [Caenorhabditis elegans] 0.0
blast D88486 protein F20H11.2 [imported] - Caenorhabditis elegans 0.0
blast AAD34660 Notch signaling pathway homolog protein 1 [Caenorhabditis elegans] ref|NP_498455.1| Notch Signaling pathway Homolog family member (nsh-1) [Caenorhabditis elegans] 0.0
blast CAE69179 Hypothetical protein CBG15212 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185408_S_AT
ccactgtttcacctcacataacatcgagtctaactcagcgatcacatacatcttcaccag
catcgtctgcatctgaaggaactgtagtacctccacggaaaaagggtcttcctataacaa
ctggttcaattgtaaaacgaacagtacaaacgaaagacggacttcagacgcagtacctaa
aagcgtttgtcaacgaaaacggtgaaaagatctataaactgttgagtccggttgccgcat
cagctgttgctcgtggaacacttccaccagggatgggacgaggtggatcaacgattggtc
gtggaggtactatggtgaacaaaaatggagaaagactgatggtagttaaaaatcacgttg
ggccgaatggtcagatgcttgtcaagaggatggtgtcacctgctgggaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACTGTTTCACCTCACATAACATC 552 269 728 Antisense
TCAGCGATCACATACATCTTCACCA 409 625 762 Antisense
TCACCAGCATCGTCTGCATCTGAAG 498 625 781 Antisense
GAAGGAACTGTAGTACCTCCACGGA 704 333 802 Antisense
GGGTCTTCCTATAACAACTGGTTCA 387 497 831 Antisense
AAGACGGACTTCAGACGCAGTACCT 544 151 881 Antisense
ATAAACTGTTGAGTCCGGTTGCCGC 655 21 941 Antisense
ATCAGCTGTTGCTCGTGGAACACTT 370 29 966 Antisense
GGAACACTTCCACCAGGGATGGGAC 104 529 982 Antisense
GGGCCGAATGGTCAGATGCTTGTCA 484 491 1087 Antisense
GAGGATGGTGTCACCTGCTGGGACA 655 403 1113 Antisense
Sequence Source Affymetrix Proprietary Database