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[185406_at]

Description Y95B8A.2 /REP_DB=WormBase Gene ID /WP=CE24691 /TR=Q9N2V3 /GB=AAF60902.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 91      6grp_highest_nonorm > 64      6grp_total > 93      4grp_total > 57      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1407
1 2 3 4 range
A 248.2
(-2.9)
P 		1088.4
(1.1)
P 		1482.4
(3)
P 		233.8
(-3)
M 		1249
B 327
(-1.9)
P 		1102.7
(1.6)
P 		1403.4
(3)
P 		75.2
(-3)
A 		1328
C 245
(-2.7)
P 		1221.2
(2.5)
P 		1322.4
(3)
P 		185.1
(-3)
A 		1137
avr 273.4
(-2.5) 		1137.4
(1.7) 		1402.7
(3) 		164.7
(-3) 		1238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 764
1 2 3 4 5 6 range
A 473.6
(-3)
P 		770.2
(0.3)
P 		707
(-0.4)
P 		644.3
(-1.1)
P 		1017.4
(3)
P 		537.3
(-2.3)
P 		544
B 510
(-3)
P 		712.3
(-1.3)
P 		683.3
(-1.6)
P 		691.3
(-1.5)
P 		1237.7
(3)
P 		584.1
(-2.4)
P 		728
C 586.6
(-1.6)
P 		747.5
(0.7)
P 		703
(0.1)
P 		710.5
(0.2)
P 		913.9
(3)
P 		482.7
(-3)
P 		431
avr 523.4
(-3) 		743.3
(-0.5) 		697.8
(-1) 		682
(-1.2) 		1056.3
(3) 		534.7
(-2.9) 		533
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 445
1 2 3 4 range
A 90.4
(-2)
P 		236.3
(0.4)
P 		387.5
(3)
P 		34.2
(-3)
M 		353
B 104.3
(-1.3)
P 		272.4
(2)
P 		325.2
(3)
P 		16
(-3)
A 		309
C 81.1
(-2.3)
P 		351.1
(1.5)
P 		460.9
(3)
P 		31.2
(-3)
A 		430
avr 91.9
(-1.9) 		286.6
(1.3) 		391.2
(3) 		27.1
(-3) 		364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 87.3
(-3)
P 		273.9
(2.1)
P 		154
(-1.2)
P 		163.4
(-0.9)
P 		307
(3)
P 		130.8
(-1.8)
P 		220
B 177.5
(-2.8)
P 		237.1
(-1.7)
P 		165.9
(-3)
P 		183.1
(-2.7)
P 		502.8
(3)
P 		217.8
(-2.1)
P 		337
C 217.4
(-0.1)
P 		228.1
(0.3)
P 		178.9
(-1.6)
P 		142.9
(-3)
P 		295.7
(3)
P 		161.6
(-2.3)
P 		153
avr 160.7
(-3) 		246.4
(-0.5) 		166.3
(-2.8) 		163.1
(-2.9) 		368.5
(3) 		170.1
(-2.7) 		208
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185406_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26
Sequence Type Exemplar sequence
Representative Public ID Y95B8A.2 NCBI
Target Description Y95B8A.2 /REP_DB=WormBase Gene ID /WP=CE24691 /TR=Q9N2V3 /GB=AAF60902.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058393 NCBI Caenorhabditis elegans Y95B8A.2 (Y95B8A.2) mRNA, complete cds. 11/11 None
SNAP00000034260 ENSEMBL cdna:SNAP chromosome:CEL140:I:938627:947545:1 11/11 None
GENEFINDER00000034289 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:938627:946614:1 11/11 None
Y95B8A.2 ENSEMBL cdna:known chromosome:CEL140:I:938485:941709:1 gene:Y95B8A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:938626-941410(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y95B8A.2
Entrez Gene 171676 Entrez gene
SwissProt Q9N2V3 EMBL-EBI
WormBase CE24691 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE61297 Hypothetical protein CBG05121 [Caenorhabditis briggsae] 0.0
blast AAF60901 Nematode astacin protease protein 30 [Caenorhabditis elegans] ref|NP_490795.2| Y95B8A.1 [Caenorhabditis elegans] 0.0
blast Q9N2V2 Zinc metalloproteinase nas-30 precursor (Nematode astacin 30) 0.0
blast AAF60902 Hypothetical protein Y95B8A.2 [Caenorhabditis elegans] ref|NP_490794.1| Y95B8A.2 [Caenorhabditis elegans] 4.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 3.3E-99
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 3.3E-99
Sequence
Target Sequence 
>C. ELEGANS:185406_AT
atgaggatctcatcgctcttattcctgactttcttggctggaattgttcaggcccaagac
ttccttgcaatgttcaagccgttcctcggaggtggcggtggtggcggtaatccgtttgca
aatccacaggcgatcggcggtctcttccaacaattcgccggtggaaatggtggaggattc
gggcagcttcttgctggagcaatggcaccgaaaccagcaccagccgcagctggaccccgc
tcagctccagctccaaccaacgaggactacaacaccgacatcgacgttccagctccaaag
gcaaaagcccgtgcagctccaactccacgaagagcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGGATCTCATCGCTCTTATTCC 667 45 13 Antisense
CTCTTATTCCTGACTTTCTTGGCTG 412 229 28 Antisense
TTCAGGCCCAAGACTTCCTTGCAAT 132 689 59 Antisense
CTTGCAATGTTCAAGCCGTTCCTCG 607 217 76 Antisense
GCGGTGGTGGCGGTAATCCGTTTGC 569 251 107 Antisense
ATCCGTTTGCAAATCCACAGGCGAT 152 39 122 Antisense
ATTCGGGCAGCTTCTTGCTGGAGCA 601 7 189 Antisense
GGAGCAATGGCACCGAAACCAGCAC 458 519 208 Antisense
CTACAACACCGACATCGACGTTCCA 103 225 279 Antisense
GACGTTCCAGCTCCAAAGGCAAAAG 174 379 295 Antisense
GCAGCTCCAACTCCACGAAGAGCAC 35 315 325 Antisense
Sequence Source Affymetrix Proprietary Database