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[185405_at]

Description F52C6.14 /REP_DB=WormBase Gene ID /WP=CE10826 /TR=O44823 /GB=AAB94979.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 42.8
(0.9)
A 		24.2
(-1.7)
A 		15.1
(-3)
A 		58.1
(3)
A 		43
B 2.1
(-3)
A 		35.8
(3)
A 		6.9
(-2.1)
A 		26.3
(1.3)
A 		34
C 6
(-3)
A 		17
(-1.2)
A 		16.6
(-1.3)
A 		42.6
(3)
A 		37
avr 17
(-2.2) 		25.7
(-0.4) 		12.9
(-3) 		42.3
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 43.3
(3)
A 		19.2
(-0.6)
A 		23.3
(0)
A 		3.1
(-3)
A 		8.2
(-2.2)
A 		9.5
(-2)
A 		40
B 6.9
(-1.8)
A 		9.6
(-0.9)
A 		3.5
(-2.9)
A 		3.8
(-2.8)
A 		3.3
(-3)
A 		21.1
(3)
A 		18
C 10
(-1.7)
A 		31.5
(3)
A 		8.3
(-2.1)
A 		8.1
(-2.1)
A 		4.2
(-3)
A 		17.8
(-0)
A 		27
avr 20.1
(3) 		20.1
(3) 		11.7
(-0.3) 		5
(-3) 		5.2
(-2.9) 		16.1
(1.4) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.6
(3)
A 		5.2
(-2.3)
A 		3.9
(-3)
A 		8.5
(-0.6)
A 		12
B 0.7
(-3)
A 		8.8
(3)
A 		1.6
(-2.3)
A 		5.6
(0.6)
A 		8
C 2
(-3)
A 		4.9
(0.3)
A 		5.8
(1.4)
A 		7.2
(3)
A 		5
avr 6.1
(1.2) 		6.3
(1.5) 		3.8
(-3) 		7.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 8
(3)
A 		6.8
(2)
A 		5.1
(0.6)
A 		0.8
(-3)
A 		2.5
(-1.6)
A 		2.3
(-1.8)
A 		7
B 2.4
(-1.6)
A 		3.2
(-1)
A 		0.8
(-3)
A 		1
(-2.8)
A 		1.3
(-2.6)
A 		7.9
(3)
A 		7
C 3.7
(-1.3)
A 		9.6
(3)
A 		2.1
(-2.5)
A 		1.6
(-2.9)
A 		1.4
(-3)
A 		6
(0.4)
A 		8
avr 4.7
(1) 		6.5
(3) 		2.7
(-1.2) 		1.1
(-3) 		1.7
(-2.3) 		5.4
(1.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185405_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5575
Sequence Type Exemplar sequence
Representative Public ID F52C6.14 NCBI
Target Description F52C6.14 /REP_DB=WormBase Gene ID /WP=CE10826 /TR=O44823 /GB=AAB94979.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061731(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061731 NCBI Caenorhabditis elegans F52C6.14 (F52C6.14) mRNA, complete cds. 11/11 None
F52C6.14 ENSEMBL cdna:known chromosome:CEL140:II:1931146:1934508:-1 gene:F52C6.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1931144-1934507(-) 99.49 100.0
Public Domain and Genome References
Gene Title
Ensembl F52C6.14
Entrez Gene 186096 Entrez gene
SwissProt O44823 EMBL-EBI
WormBase CE10826 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94979 Hypothetical protein F52C6.14 [Caenorhabditis elegans] ref|NP_494132.1| F52C6.14 [Caenorhabditis elegans] 0.0
blast AAK29841 Hypothetical protein H05C05.3 [Caenorhabditis elegans] ref|NP_497645.2| H05C05.3 [Caenorhabditis elegans] 7.0E-97
blast AAF59578 Hypothetical protein Y54G2A.20 [Caenorhabditis elegans] ref|NP_500269.1| Y54G2A.20 [Caenorhabditis elegans] 3.0E-92
Sequence
Target Sequence 
>C. ELEGANS:185405_AT
gcgcctatcgatgtcactgtgactgcctcttcagcactgctggagtggcttgtaagcaca
ttcacggggtacttagctacatcgcaaaatgtatcagacaagaggaactgaccggcgaga
actttatgatggctttggtaaacactaatctcaggaaacagttgagagaaggggcagaag
agctcccgggaaacgtggtgaaagtcaaaaactttttgaaagagtatctcgcagagtctt
ctacacctaccctcgtcgagcgagcggattcgagagatcaaccactaacggcaagacagt
ctatgcatatggaatctactctcaaggttcgtgaaaaaacaaaaaggcgaggcgtggaat
catctaatgtcaagttgctaccgaaaagaagacttgaaagatgcagtatttgtgcagcgc
aagatcctatgttgcaccctgacactgatccccaagaatttgagagccgagtgacggact
ggaaaagatgcgtcatttgtaagagtcctgcacatatttcatgcgccttggtgagcaaga
aatgtccatgttcactcgattcatcctttgaactcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCCTATCGATGTCACTGTGACTG 709 287 1727 Antisense
CTGCCTCTTCAGCACTGCTGGAGTG 521 235 1749 Antisense
TCACGGGGTACTTAGCTACATCGCA 143 619 1788 Antisense
GAAGAGCTCCCGGGAAACGTGGTGA 574 337 1903 Antisense
AGTATCTCGCAGAGTCTTCTACACC 111 63 1949 Antisense
TACCCTCGTCGAGCGAGCGGATTCG 81 649 1974 Antisense
AGCGCAAGATCCTATGTTGCACCCT 192 83 2142 Antisense
GATGCGTCATTTGTAAGAGTCCTGC 308 415 2213 Antisense
GAGTCCTGCACATATTTCATGCGCC 139 401 2229 Antisense
GAAATGTCCATGTTCACTCGATTCA 444 361 2265 Antisense
CTCGATTCATCCTTTGAACTCTTCC 403 233 2281 Antisense
Sequence Source Affymetrix Proprietary Database