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[185404_s_at]

Description Y38E10A.3 /REP_DB=WormBase Gene ID /WP=CE21583 /TR=Q9NAK7 /GB=CAB54394.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 33      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 0.5
(-3)
A 		42.9
(3)
A 		17.5
(-0.6)
A 		23.6
(0.3)
A 		42
B 12.9
(0.5)
A 		1.3
(-3)
A 		21.4
(3)
A 		16.2
(1.4)
A 		20
C 10.8
(3)
A 		4
(-1.1)
A 		0.9
(-3)
A 		6.8
(0.6)
A 		10
avr 8.1
(-3) 		16.1
(3) 		13.3
(0.9) 		15.5
(2.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 3.6
(-1.9)
A 		2.2
(-2.6)
A 		1.3
(-3)
A 		13.6
(3)
A 		12.6
(2.5)
A 		6.5
(-0.5)
A 		12
B 5.6
(-2.1)
A 		0.9
(-3)
A 		0.9
(-3)
A 		33
(3)
A 		15.2
(-0.3)
A 		8.1
(-1.7)
A 		32
C 7.8
(-1.7)
A 		2.5
(-2.8)
A 		1.6
(-3)
A 		30.7
(3)
A 		1.7
(-3)
A 		7.5
(-1.8)
A 		29
avr 5.7
(-1.9) 		1.9
(-2.9) 		1.3
(-3) 		25.8
(3) 		9.8
(-0.9) 		7.4
(-1.5) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.2
(-3)
A 		9.3
(3)
A 		4.6
(-0.1)
A 		3.4
(-0.9)
A 		9
B 4.1
(1.9)
A 		0.3
(-3)
A 		5
(3)
A 		3.4
(1)
A 		5
C 3.6
(3)
A 		1.1
(-1.5)
A 		0.3
(-3)
A 		1.1
(-1.5)
A 		3
avr 2.6
(-3) 		3.6
(3) 		3.3
(1.2) 		2.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.7
(-2.3)
A 		0.8
(-2.1)
A 		0.3
(-3)
A 		3.4
(2.3)
A 		3.8
(3)
A 		1.6
(-0.8)
A 		4
B 1.9
(-1.8)
A 		0.3
(-2.9)
A 		0.2
(-3)
A 		8.7
(3)
A 		6.2
(1.2)
A 		3
(-1)
A 		9
C 2.9
(-0.4)
A 		0.8
(-2.6)
A 		0.4
(-3)
A 		6.2
(3)
A 		0.6
(-2.8)
A 		2.5
(-0.8)
A 		6
avr 1.8
(-1.4) 		0.6
(-2.7) 		0.3
(-3) 		6.1
(3) 		3.5
(0.3) 		2.4
(-0.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185404_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2786
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.3 NCBI
Target Description Y38E10A.3 /REP_DB=WormBase Gene ID /WP=CE21583 /TR=Q9NAK7 /GB=CAB54394.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064285(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064285 NCBI Caenorhabditis elegans Y38E10A.3 (Y38E10A.3) mRNA, complete cds. 11/11 None
SNAP00000017426 ENSEMBL cdna:SNAP chromosome:CEL140:II:12573938:12574669:-1 11/11 None
GENEFINDER00000017470 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12573938:12574669:-1 11/11 None
Y38E10A.3 ENSEMBL cdna:known chromosome:CEL140:II:12573897:12574669:-1 gene:Y38E10A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12573934-12574666(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.3
Entrez Gene 174892 Entrez gene
SwissProt Q9NAK7 EMBL-EBI
WormBase CE21583 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54394 Hypothetical protein Y38E10A.3 [Caenorhabditis elegans] ref|NP_496686.1| Y38E10A.3 [Caenorhabditis elegans] 1.0E-131
blast CAA93504 Hypothetical protein F56D5.5 [Caenorhabditis elegans] ref|NP_501660.1| F56D5.5 [Caenorhabditis elegans] 4.0E-60
Sequence
Target Sequence 
>C. ELEGANS:185404_S_AT
gaagctggaagtcgaagcgctcggtaacttgccagcccagcgcaatctttcggaagacat
ttctaagcgtgaaattcagagtttgaagaagcaagttacagttttaaaagaagaaattgg
actggaagggagcaaactggcaatcgcgaatgcagttcaagagcagttaaaaaccgattt
ggcagatgagaaggaaaaatgtcgttttacaagagaagtcacgaagctctatcaaatgaa
catccagctcgaccaaccatctcgggatcaagtcgcggattatcttcaattcgaaattcg
aactgtcaaggaagttttgagacaaaaggaagaagaactggaaaaactgatggctgaaaa
caaatataattattttgaaaattgtgctgaaaagtgccgaattcaagaagaaacgagtgc
tgcaagaagagaagctgatctacttcgcgatgaaatgaagacgcttgtgaagaatatgaa
cgccaagagcgaagaattgctcggacaattgcgagactctactgaaaaatgtgaagagat
ggagattgattgtaacatccaactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTGGAAGTCGAAGCGCTCGGT 73 343 126 Antisense
AAGTCGAAGCGCTCGGTAACTTGCC 220 159 134 Antisense
GGAAGGGAGCAAACTGGCAATCGCG 654 531 249 Antisense
GGCAATCGCGAATGCAGTTCAAGAG 663 533 264 Antisense
GAAGCTCTATCAAATGAACATCCAG 358 343 348 Antisense
ACCATCTCGGGATCAAGTCGCGGAT 485 85 381 Antisense
CAAGTCGCGGATTATCTTCAATTCG 159 185 394 Antisense
AATTGTGCTGAAAAGTGCCGAATTC 158 179 505 Antisense
GAGAAGCTGATCTACTTCGCGATGA 120 393 554 Antisense
CGGACAATTGCGAGACTCTACTGAA 668 241 627 Antisense
GGAGATTGATTGTAACATCCAACTG 87 519 666 Antisense
Sequence Source Affymetrix Proprietary Database