[Home] | [Total List]

[185402_at]

Description W02C12.2 /REP_DB=WormBase Gene ID /WP=CE14414 /TR=P91525 /GB=AAB37996.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 31      6grp_total > 04      4grp_total > 22      6grp_high1_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 571
1 2 3 4 range
A 909.7
(3)
P 		646.1
(-0.7)
P 		483.5
(-3)
P 		815.3
(1.7)
P 		426
B 954
(2.5)
P 		614.9
(-1.4)
P 		477.6
(-3)
P 		999.4
(3)
P 		522
C 790.9
(1.2)
P 		623.8
(-0.7)
P 		428.6
(-3)
P 		942.6
(3)
P 		514
avr 884.9
(2.5) 		628.3
(-0.8) 		463.2
(-3) 		919.1
(3) 		456

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 711
1 2 3 4 5 6 range
A 1366.1
(3)
P 		916.2
(-1.8)
P 		1012.2
(-0.8)
P 		1000.8
(-0.9)
P 		937.8
(-1.6)
P 		803
(-3)
P 		563
B 1352.5
(3)
P 		1159.4
(1)
P 		932.8
(-1.3)
P 		994.8
(-0.7)
P 		933.8
(-1.3)
P 		765.3
(-3)
P 		587
C 1172.7
(3)
P 		1015.4
(1.2)
P 		1052.6
(1.6)
P 		1050
(1.6)
P 		869.6
(-0.5)
P 		655
(-3)
P 		518
avr 1297.1
(3) 		1030.3
(0.1) 		999.2
(-0.2) 		1015.2
(-0) 		913.7
(-1.1) 		741.1
(-3) 		556
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 331.2
(3)
P 		140.3
(-2.4)
P 		126.4
(-2.8)
P 		119.3
(-3)
P 		212
B 304.2
(3)
P 		151.9
(-1.7)
P 		110.7
(-3)
P 		213
(0.2)
P 		194
C 261.8
(3)
P 		179.3
(-1.4)
P 		149.4
(-3)
P 		158.9
(-2.5)
P 		112
avr 299.1
(3) 		157.2
(-2) 		128.8
(-3) 		163.7
(-1.8) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 251.8
(-0.4)
P 		325.8
(3)
P 		220.4
(-1.9)
P 		253.8
(-0.3)
P 		283
(1)
P 		195.5
(-3)
P 		130
B 470.6
(3)
P 		385.9
(0.9)
P 		226.5
(-3)
P 		263.5
(-2.1)
P 		379.4
(0.8)
P 		285.4
(-1.6)
P 		244
C 434.7
(3)
P 		309.8
(-0.4)
P 		267.9
(-1.5)
P 		211.1
(-3)
P 		281.4
(-1.1)
P 		219.3
(-2.8)
P 		224
avr 385.7
(3) 		340.5
(1.2) 		238.3
(-2.8) 		242.8
(-2.6) 		314.6
(0.2) 		233.4
(-3) 		152
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185402_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10450
Sequence Type Exemplar sequence
Representative Public ID W02C12.2 NCBI
Target Description W02C12.2 /REP_DB=WormBase Gene ID /WP=CE14414 /TR=P91525 /GB=AAB37996.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068058
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000027728 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4005529:4014376:-1 9/11 None
GENEFINDER00000027735 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4005529:4007811:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068058 7/11 Cross Hyb Matching Probes None
W02C12.2 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4005534-4006733(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE61468 Hypothetical protein CBG05361 [Caenorhabditis briggsae] 9.0E-49
blast AAB37996 Hypothetical protein W02C12.2 [Caenorhabditis elegans] ref|NP_500459.2| W02C12.2 [Caenorhabditis elegans] 1.0E-33
blast CAE61468 Hypothetical protein CBG05361 [Caenorhabditis briggsae] 8.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000027728 2 12-34,68-90
GENEFINDER00000027735 4 82-104,119-141,154-176,212-234
Sequence
Target Sequence 
>C. ELEGANS:185402_AT
gtgatagccttcttattcttcagcatgttcctgatctgcgagatcctggggactatattt
ataattttggcggcgcagaagaaaatcgcaagatattgtataccgaggctgaaattgata
gttcacacaatttcaaagctcaaaattttgagaaatctccctcttcacccagatattcca
gactcgtgctaattgccggtctcaccgtgtgctcactaattgtgctcatctttatggtca
cctacttcgcaggctcggcggcgtcggtgaacacgttcctgttccgtgtctacgagtatt
tctttaatgagacgctggaagacacggagaaagtagagctcaaacatgagttgaggtatt
atggtgcatcgttttttgtgctcgcagccacgttcttcatttacaacgtgttcgctctct
ggttgacaatcaagtttaaacaatctctcaacgacttcgagccggtgccgactgagccaa
ctgctccgcaacttgctcataatccggctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATAGCCTTCTTATTCTTCAGCA 352 485 50 Antisense
TCACCCAGATATTCCAGACTCGTGC 191 627 214 Antisense
AGACTCGTGCTAATTGCCGGTCTCA 459 71 229 Antisense
CACCGTGTGCTCACTAATTGTGCTC 475 201 252 Antisense
GTGCTCATCTTTATGGTCACCTACT 39 481 271 Antisense
TGAACACGTTCCTGTTCCGTGTCTA 465 573 317 Antisense
TGGTGCATCGTTTTTTGTGCTCGCA 254 553 411 Antisense
GCAGCCACGTTCTTCATTTACAACG 78 315 433 Antisense
TGTTCGCTCTCTGGTTGACAATCAA 46 563 458 Antisense
AACAATCTCTCAACGACTTCGAGCC 250 135 488 Antisense
CGCAACTTGCTCATAATCCGGCTTA 298 251 536 Antisense
Sequence Source Affymetrix Proprietary Database