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[185399_at]

Description Y75B8A.28 /REP_DB=WormBase Gene ID /WP=CE23039 /TR=Q9XW81 /GB=CAA22088.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 60.5
(-3)
A 		61.6
(-2.9)
A 		100.3
(0.3)
P 		133
(3)
A 		73
B 56
(-2.9)
A 		93
(3)
A 		67.1
(-1.1)
P 		55.3
(-3)
A 		38
C 46.6
(-3)
A 		82.6
(-0.7)
A 		102.4
(0.6)
P 		139.8
(3)
P 		93
avr 54.4
(-3) 		79.1
(-0.3) 		89.9
(0.9) 		109.4
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 8.9
(-3)
A 		45.3
(-0.8)
A 		107.4
(3)
P 		106.1
(2.9)
P 		68.9
(0.7)
P 		95.5
(2.3)
P 		99
B 28.6
(-3)
A 		57.3
(-1.4)
A 		137.2
(3)
P 		70.9
(-0.7)
P 		70.2
(-0.7)
A 		126.6
(2.4)
P 		109
C 32.1
(-3)
A 		67.1
(-0.7)
A 		109.5
(2.1)
P 		115
(2.4)
P 		73.2
(-0.3)
P 		124
(3)
P 		92
avr 23.2
(-3) 		56.6
(-0.9) 		118
(3) 		97.3
(1.7) 		70.8
(0) 		115.4
(2.8) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 22
(1)
A 		13.4
(-3)
A 		26.2
(3)
P 		19.5
(-0.1)
A 		13
B 17.8
(0.2)
A 		23
(3)
A 		15.5
(-1)
P 		11.8
(-3)
A 		11
C 15.4
(-3)
A 		23.8
(-0.5)
A 		35.7
(3)
P 		23.6
(-0.6)
P 		20
avr 18.4
(-2.9) 		20.1
(-1.6) 		25.8
(3) 		18.3
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 1.6
(-3)
A 		16.1
(0.4)
A 		23.4
(2.2)
P 		26.9
(3)
P 		20.8
(1.6)
P 		23.2
(2.1)
P 		25
B 10
(-3)
A 		19.1
(-1.5)
A 		33.3
(0.8)
P 		18.8
(-1.6)
P 		28.5
(-0)
A 		47.2
(3)
P 		37
C 11.9
(-3)
A 		20.5
(-1.3)
A 		27.9
(0.2)
P 		23.1
(-0.7)
P 		23.7
(-0.6)
P 		41.5
(3)
P 		30
avr 7.8
(-3) 		18.6
(-0.8) 		28.2
(1.1) 		22.9
(0.1) 		24.3
(0.4) 		37.3
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185399_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7301
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.28 NCBI
Target Description Y75B8A.28 /REP_DB=WormBase Gene ID /WP=CE23039 /TR=Q9XW81 /GB=CAA22088.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067199(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067199 NCBI Caenorhabditis elegans Y75B8A.28 (Y75B8A.28) mRNA, complete cds. 11/11 None
GENEFINDER00000020181 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12318983:12322245:1 9/11 None
Y75B8A.28 ENSEMBL cdna:known chromosome:CEL140:III:12318983:12322778:1 gene:Y75B8A.28 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020094 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12318978-12322774(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.28
Entrez Gene 190712 Entrez gene
SwissProt Q9XW81 EMBL-EBI
WormBase CE23039 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22088 Hypothetical protein Y75B8A.28 [Caenorhabditis elegans] ref|NP_499600.1| Y75B8A.28 [Caenorhabditis elegans] 0.0
blast CAA22088 Hypothetical protein Y75B8A.28 [Caenorhabditis elegans] ref|NP_499600.1| Y75B8A.28 [Caenorhabditis elegans] 1.0E-174
blast CAA22087 Hypothetical protein Y75B8A.27 [Caenorhabditis elegans] ref|NP_499599.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-92) [Caenorhabditis elegans] 3.0E-28
blast CAA22087 Hypothetical protein Y75B8A.27 [Caenorhabditis elegans] ref|NP_499599.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-92) [Caenorhabditis elegans] 5.0E-18
blast T25674 hypothetical protein F08D12.6 - Caenorhabditis elegans 4.0E-16
Sequence
Target Sequence 
>C. ELEGANS:185399_AT
aaatggagccaattcctgctgttccgtcaccagtggcaatggaattagaatcaccgattg
catctattgatgcacaattggatgactatcgcagaaaagagaaggcaaaggggtactctt
caaagtgcttgaaaaataagaaactcgaattggagcacaataaggagagatttgaaaatt
tgacatcggagaagactgatatagtttctaaaaacctagaaacagaaaaattgcttcatt
tcgcttgtgatagagttttgattccattcttgggtgataacaactccaacaattccaata
ttggaactgaagatgtcataagcttcttgcacaatttggaggttgagaaaaataaaatct
ggcagaaaagtttgttggaacggcaaaaggatgatacattggtggttgctgaaaaattgc
aaaacattaaaaaacgagaattggatgttgctacctacaataaggataataaaaaggaga
tggcggaacgagaaaaagtaagtcaagtaaccttcgctactcgacacaacagggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGGAGCCAATTCCTGCTGTTCC 253 121 479 Antisense
TGTTCCGTCACCAGTGGCAATGGAA 62 561 498 Antisense
GAATCACCGATTGCATCTATTGATG 328 327 526 Antisense
AAGGGGTACTCTTCAAAGTGCTTGA 111 159 586 Antisense
AATTGCTTCATTTCGCTTGTGATAG 274 179 707 Antisense
TAGAGTTTTGATTCCATTCTTGGGT 508 651 729 Antisense
GATGTCATAAGCTTCTTGCACAATT 308 409 790 Antisense
GATGATACATTGGTGGTTGCTGAAA 361 411 868 Antisense
GAGAATTGGATGTTGCTACCTACAA 262 391 914 Antisense
GTAAGTCAAGTAACCTTCGCTACTC 247 423 976 Antisense
CTTCGCTACTCGACACAACAGGGTG 664 217 990 Antisense
Sequence Source Affymetrix Proprietary Database