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[185398_at]

Description F21C10.8 /REP_DB=WormBase Gene ID /WP=CE07123 /TR=Q19662 /GB=AAA97972.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 30      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_highest_nonorm > 33      6grp_total > 31      4grp_total > 29      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 983
1 2 3 4 range
A 1497.5
(2.6)
P 		1537.1
(3)
P 		969.6
(-3)
P 		1424
(1.8)
P 		568
B 1701.3
(2.1)
P 		1555.2
(1.2)
P 		861
(-3)
P 		1844.3
(3)
P 		983
C 1631.5
(3)
P 		1477.4
(1.5)
P 		1000.8
(-3)
P 		1492.2
(1.7)
P 		631
avr 1610.1
(3) 		1523.2
(2.2) 		943.8
(-3) 		1586.8
(2.8) 		666

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1533
1 2 3 4 5 6 range
A 1554.1
(-0.5)
P 		2148.9
(3)
P 		1856.2
(1.3)
P 		1802.8
(1)
P 		1197.8
(-2.5)
P 		1120.3
(-3)
P 		1029
B 1344.5
(-0.1)
P 		1501.8
(1.1)
P 		1768.6
(3)
P 		1295.7
(-0.4)
P 		937.5
(-3)
P 		1110.1
(-1.8)
P 		831
C 1583.8
(-0.8)
P 		1618.2
(-0.6)
P 		2470
(3)
P 		1514.1
(-1.1)
P 		1060.8
(-3)
P 		1177.7
(-2.5)
P 		1409
avr 1494.1
(-0.3) 		1756.3
(1.3) 		2031.6
(3) 		1537.5
(-0.1) 		1065.4
(-3) 		1136
(-2.6) 		966
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 545.2
(3)
P 		333.7
(-0.8)
P 		253.5
(-2.2)
P 		208.4
(-3)
P 		337
B 542.5
(3)
P 		384.1
(0.2)
P 		199.5
(-3)
P 		393
(0.4)
P 		343
C 540.1
(3)
P 		424.8
(0.6)
P 		348.8
(-1)
P 		251.6
(-3)
P 		289
avr 542.6
(3) 		380.9
(-0.5) 		267.3
(-3) 		284.3
(-2.6) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 492
1 2 3 4 5 6 range
A 286.5
(-2.8)
P 		764.3
(3)
P 		404.2
(-1.4)
P 		457.2
(-0.7)
P 		361.4
(-1.9)
P 		272.7
(-3)
P 		492
B 467.8
(1.8)
P 		499.9
(3)
P 		429.5
(0.3)
P 		343.2
(-3)
P 		380.9
(-1.6)
P 		413.9
(-0.3)
P 		157
C 587.1
(2.2)
P 		493.8
(0.5)
P 		628.7
(3)
P 		304.5
(-3)
P 		343.3
(-2.3)
P 		394.3
(-1.3)
P 		324
avr 447.1
(-0.7) 		586
(3) 		487.5
(0.4) 		368.3
(-2.8) 		361.9
(-3) 		360.3
(-3) 		226
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185398_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11794
Sequence Type Exemplar sequence
Representative Public ID F21C10.8 NCBI
Target Description F21C10.8 /REP_DB=WormBase Gene ID /WP=CE07123 /TR=Q19662 /GB=AAA97972.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028658(11), NM_001028659(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028658 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-31) (pqn-31) mRNA, complete cds. 11/11 None
NM_001028659 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-31) (pqn-31) mRNA, complete cds. 11/11 None
SNAP00000042376 ENSEMBL cdna:SNAP chromosome:CEL140:V:9112208:9113529:1 11/11 None
GENEFINDER00000042388 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9111172:9113529:1 11/11 None
F21C10.8a ENSEMBL cdna:known chromosome:CEL140:V:9112194:9113529:1 gene:F21C10.8 11/11 None
F21C10.8b ENSEMBL cdna:known chromosome:CEL140:V:9112208:9113575:1 gene:F21C10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9112208-9113530(+) 100.0 100.0
Public Domain and Genome References
Ensembl F21C10.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97972 Prion-like-(q/n-rich)-domain-bearing protein protein 31, isoform a [Caenorhabditis elegans] ref|NP_001023829.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-31) [Caenorhabditis elegans] 1.0E-102
blast AAQ23124 Prion-like-(q/n-rich)-domain-bearing protein protein 31, isoform b [Caenorhabditis elegans] ref|NP_001023830.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-31) [Caenorhabditis elegans] 2.0E-93
blast AAA97972 Prion-like-(q/n-rich)-domain-bearing protein protein 31, isoform a [Caenorhabditis elegans] ref|NP_001023829.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-31) [Caenorhabditis elegans] 2.0E-91
blast AAA97972 Prion-like-(q/n-rich)-domain-bearing protein protein 31, isoform a [Caenorhabditis elegans] ref|NP_001023829.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-31) [Caenorhabditis elegans] 4.0E-90
blast AAQ23124 Prion-like-(q/n-rich)-domain-bearing protein protein 31, isoform b [Caenorhabditis elegans] ref|NP_001023830.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-31) [Caenorhabditis elegans] 5.0E-90
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042388 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:185398_AT
ggacagactagacaagccactcaacaagaacttcaacaaattcaacaatacagaaacagc
gttgatcaatacatgaaccaagtaaacggatatgttggccaatggattaactcagtcttc
caaactcttccatcagtcaacaattctttcccaaatatcccaacaatgccaaccatgcca
acggctccatgtttgtgtaacgctcaaaattgtggaaacactacaaacaccaatgccatt
ggaaataccccacaacgtgatgcttatggaaaccaaatgggatcaaactcacaattccag
caagcaaatcaaaatggacaataccaaaatactcaataccagcaacaaaatggtcaaaat
ggtcaaaatcaattccaacagtcgaatggccagaaccaaaactcccaatatcagcagacc
agcaaccaacaaatgaacaatcaacaatatcaaactggagattatcaacagaccaacacc
caatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACAGACTAGACAAGCCACTCAAC 667 525 577 Antisense
TTAACTCAGTCTTCCAAACTCTTCC 573 683 683 Antisense
CATCAGTCAACAATTCTTTCCCAAA 92 213 707 Antisense
CTTTCCCAAATATCCCAACAATGCC 509 223 722 Antisense
AACAATGCCAACCATGCCAACGGCT 277 135 738 Antisense
GCCAACGGCTCCATGTTTGTGTAAC 64 279 753 Antisense
GAAACACTACAAACACCAATGCCAT 154 357 791 Antisense
GAAATACCCCACAACGTGATGCTTA 130 363 818 Antisense
GATCAAACTCACAATTCCAGCAAGC 372 421 857 Antisense
AAAACTCCCAATATCAGCAGACCAG 189 131 974 Antisense
TTATCAACAGACCAACACCCAATCA 85 681 1038 Antisense
Sequence Source Affymetrix Proprietary Database