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[185397_at]

Description AH6.13 /REP_DB=WormBase Gene ID /WP=CE07654 /TR=SW:Q09211 /GB=CAA88087.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 02      6grp_cgc > 85      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 2.3
(-3)
A 		5.8
(-2.5)
A 		16
(-1.1)
A 		45.4
(3)
A 		43
B 13.6
(-1.6)
A 		2.7
(-3)
A 		3.4
(-2.9)
A 		48.7
(3)
P 		46
C 2.9
(-3)
A 		7.9
(-2.4)
A 		6.5
(-2.6)
A 		53.7
(3)
M 		51
avr 6.3
(-2.9) 		5.5
(-3) 		8.6
(-2.6) 		49.3
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 49.3
(3)
A 		1.2
(-3)
A 		19
(-0.8)
A 		24.1
(-0.1)
A 		8.9
(-2)
A 		3
(-2.8)
A 		48
B 0.8
(-3)
A 		10.6
(-2)
A 		33.7
(0.5)
A 		56.8
(3)
A 		16.3
(-1.3)
A 		11.3
(-1.9)
A 		56
C 3.1
(-3)
A 		8.5
(-1.8)
A 		3.2
(-3)
A 		4.6
(-2.7)
A 		30.1
(3)
A 		3.6
(-2.9)
A 		27
avr 17.7
(0.1) 		6.8
(-2.8) 		18.6
(0.4) 		28.5
(3) 		18.4
(0.3) 		6
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.8
(-3)
A 		1.3
(-2.5)
A 		4.2
(0.5)
A 		6.6
(3)
A 		6
B 4.3
(-0.8)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		10.4
(3)
P 		10
C 1
(-3)
A 		2.3
(-2)
A 		2.3
(-2)
A 		9.1
(3)
M 		8
avr 2
(-2.5) 		1.4
(-3) 		2.4
(-2.2) 		8.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.1
(3)
A 		0.4
(-3)
A 		4.1
(-0.4)
A 		6.1
(0.9)
A 		2.7
(-1.4)
A 		0.7
(-2.8)
A 		9
B 0.3
(-3)
A 		3.5
(-1.7)
A 		8.2
(0.2)
A 		15.1
(3)
A 		6.6
(-0.4)
A 		4.2
(-1.4)
A 		15
C 1.1
(-2.8)
A 		2.6
(-1.8)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		9.7
(3)
A 		1.2
(-2.7)
A 		9
avr 3.5
(-1.3) 		2.2
(-2.8) 		4.4
(-0.3) 		7.4
(3) 		6.3
(1.8) 		2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185397_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3576
Sequence Type Exemplar sequence
Representative Public ID AH6.13 NCBI
Target Description AH6.13 /REP_DB=WormBase Gene ID /WP=CE07654 /TR=SW:Q09211 /GB=CAA88087.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000033446 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9526942:9533229:1 9/11 None
AH6.13 ENSEMBL cdna:pseudogene chromosome:CEL140:II:9530427:9531163:1 gene:AH6.13 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033434 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9530423-9531160(+) 100.0 100.0
Public Domain and Genome References
Ensembl AH6.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88084 Hypothetical protein AH6.6 [Caenorhabditis elegans] ref|NP_496044.1| Serpentine Receptor, class A (alpha) family member (sra-2) [Caenorhabditis elegans] sp|Q09204|SRA2_CAEEL Serpentine receptor class alpha-2 (Protein sra-2) prf||2123261B chemosensory receptor 1.0E-179
blast CAA88083 Hypothetical protein AH6.10 [Caenorhabditis elegans] ref|NP_496052.1| Serpentine Receptor, class A (alpha) family member (sra-6) [Caenorhabditis elegans] sp|Q09208|SRA6_CAEEL Serpentine receptor class alpha-6 (Protein sra-6) prf||2123261F chemosensory receptor 1.0E-91
blast CAA88086 Hypothetical protein AH6.7 [Caenorhabditis elegans] ref|NP_496048.1| Serpentine Receptor, class A (alpha) family member (sra-3) [Caenorhabditis elegans] sp|Q09205|SRA3_CAEEL Serpentine receptor class alpha-3 (Protein sra-3) 3.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.2E-7
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.4E-35
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.0E-126
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 6.6E-56
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 3.2E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000033446 11 51-73,83-105,164-186,241-263,284-303,327-349,376-398,413-435,486-508,523-545,596-618
Sequence
Target Sequence 
>C. ELEGANS:185397_AT
gtcgtatgtaaagtgtgctccagaagaaatcatagaaagattcgaaagtatacatcaaaa
atcatctcaaattgtctatcttgcagcaataatttccacatttattacgacatattttgc
tataaaagttatctttacccaatcttttttcgaaatgtccacaaagattctattagttca
aaacttattttacacgaatttatatcaattgttctacggatttgaagcaattggaatgtt
agtccgtttcaaagttcgagctcgattccaaaagcaacagctgatcgagtcaactgaagc
catttgttatttaacactttcccagtttttggcagtctttgtaaattcatcgggtcttgt
gataatgtcctttatctgggacagtatgtctattcaattattctacgctttgatcgtttg
gctctatgcgttccctgttgttgcattgatgttccccgtacttttgatttatcaaattcg
aaaaagtcgatcgcggagagctctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGTATGTAAAGTGTGCTCCAGAA 303 473 15 Antisense
CATCTCAAATTGTCTATCTTGCAGC 366 213 77 Antisense
TAGTCCGTTTCAAAGTTCGAGCTCG 253 647 254 Antisense
GTTCGAGCTCGATTCCAAAAGCAAC 280 443 268 Antisense
GATCGAGTCAACTGAAGCCATTTGT 223 417 297 Antisense
ACACTTTCCCAGTTTTTGGCAGTCT 704 107 328 Antisense
TCGGGTCTTGTGATAATGTCCTTTA 363 593 364 Antisense
GCTTTGATCGTTTGGCTCTATGCGT 190 305 421 Antisense
CTATGCGTTCCCTGTTGTTGCATTG 391 225 438 Antisense
TGTTCCCCGTACTTTTGATTTATCA 137 563 464 Antisense
AAAGTCGATCGCGGAGAGCTCTGAA 157 123 497 Antisense
Sequence Source Affymetrix Proprietary Database