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[185396_at]

Description Y57G11C.8 /REP_DB=WormBase Gene ID /WP=CE14940 /TR=O18234 /GB=CAB16510.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 96      6grp_total > 86      4grp_total > 13      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 129.2
(0.9)
A 		71.5
(-3)
A 		89.3
(-1.8)
A 		159.5
(3)
A 		88
B 90
(0.5)
A 		95.3
(3)
A 		82.5
(-3)
A 		89.9
(0.5)
A 		13
C 113.2
(-0.9)
A 		77.2
(-2.7)
A 		71.8
(-3)
A 		187.4
(3)
P 		116
avr 110.8
(-0.2) 		81.3
(-3) 		81.2
(-3) 		145.6
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 124
(-1.8)
P 		97.1
(-3)
A 		165.1
(0.1)
P 		182.5
(0.8)
P 		158.9
(-0.2)
P 		230.4
(3)
P 		133
B 117.4
(-1.7)
P 		118.7
(-1.6)
P 		92.6
(-3)
P 		98.3
(-2.7)
P 		182.5
(1.7)
P 		206.3
(3)
P 		114
C 99.1
(-3)
A 		132.7
(-1.2)
A 		122.1
(-1.7)
A 		171.2
(0.9)
P 		119
(-1.9)
P 		208.7
(3)
P 		110
avr 113.5
(-3) 		116.2
(-2.8) 		126.6
(-2.2) 		150.7
(-0.8) 		153.5
(-0.6) 		215.1
(3) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 47.1
(3)
A 		15.5
(-3)
A 		23.4
(-1.5)
A 		23.4
(-1.5)
A 		32
B 28.7
(3)
A 		23.5
(-0.3)
A 		19.1
(-3)
A 		19.2
(-2.9)
A 		10
C 37.5
(3)
A 		22.2
(-3)
A 		25
(-1.9)
A 		31.6
(0.7)
P 		15
avr 37.8
(3) 		20.4
(-3) 		22.5
(-2.3) 		24.7
(-1.5) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 22.9
(-3)
P 		34.5
(-0.9)
A 		36
(-0.6)
P 		46.3
(1.2)
P 		48
(1.5)
P 		56.1
(3)
P 		33
B 40.8
(-1)
P 		39.5
(-1.1)
P 		22.5
(-3)
P 		26
(-2.6)
P 		74.1
(2.7)
P 		76.9
(3)
P 		54
C 36.7
(-2.1)
A 		40.5
(-1.5)
A 		31.1
(-3)
A 		34.4
(-2.5)
P 		38.5
(-1.9)
P 		69.9
(3)
P 		39
avr 33.5
(-2.4) 		38.2
(-1.7) 		29.9
(-3) 		35.6
(-2.1) 		53.5
(0.8) 		67.6
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185396_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8608
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.8 NCBI
Target Description Y57G11C.8 /REP_DB=WormBase Gene ID /WP=CE14940 /TR=O18234 /GB=CAB16510.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070383(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070383 NCBI Caenorhabditis elegans Y57G11C.8 (Y57G11C.8) mRNA, complete cds. 11/11 None
GENEFINDER00000003599 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14781897:14783279:1 10/11 None
Y57G11C.8 ENSEMBL cdna:known chromosome:CEL140:IV:14781897:14783279:1 gene:Y57G11C.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003473 7/11 Cross Hyb Matching Probes None
SNAP00000003474 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14781902-14783285(+) 98.51 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G11C.8
Entrez Gene 178400 Entrez gene
SwissProt O18234 EMBL-EBI
WormBase CE14940 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16510 Hypothetical protein Y57G11C.8 [Caenorhabditis elegans] ref|NP_502784.1| Y57G11C.8 [Caenorhabditis elegans] 1.0E-167
blast CAB16510 Hypothetical protein Y57G11C.8 [Caenorhabditis elegans] ref|NP_502784.1| Y57G11C.8 [Caenorhabditis elegans] 1.0E-146
blast CAE73911 Hypothetical protein CBG21520 [Caenorhabditis briggsae] 1.0E-76
blast CAE73911 Hypothetical protein CBG21520 [Caenorhabditis briggsae] 3.0E-74
blast CAB54422 Hypothetical protein Y39E4B.13 [Caenorhabditis elegans] ref|NP_499712.1| Y39E4B.13 [Caenorhabditis elegans] 3.0E-16
blast CAB54422 Hypothetical protein Y39E4B.13 [Caenorhabditis elegans] ref|NP_499712.1| Y39E4B.13 [Caenorhabditis elegans] 3.0E-10
Sequence
Target Sequence 
>C. ELEGANS:185396_AT
taaaatgctcgacagtgctctcgctgtgctccacgactttagtcatttggttcgaaccgc
acacgtctccaatgaaacgatcgccttgtccgttgtctattttttgatagattttcacaa
aatcacgccaaatatcggcacagcgagcgatccgtggtacaagatgctgtgtagagacgc
cacgttggatgagctggaacggatgagagtgctcattgagcaagatttgatgggtggaaa
gagcgaggaatacagtggaaatggaactaatatagtaaattttcgtgtcgttctaatttt
ttttgaggcggcaaagatctctttctataacggtttcgattcatttcgtcccgcaacgtc
gtcgggttctggatccaaaccgacgaacgatgattttccggttggagtcgcacctccaca
cattccactagctgcgaaaaagtcggatgagaggacattggcagatattgaatcgattca
gagtgagaaggctgtgctccgggataagaagctcaaagctcaaatgggcggtaacaagtc
caaggttctctcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAATGCTCGACAGTGCTCTCGCT 627 639 351 Antisense
GTGCTCCACGACTTTAGTCATTTGG 98 479 376 Antisense
GTCATTTGGTTCGAACCGCACACGT 456 467 392 Antisense
ACCGCACACGTCTCCAATGAAACGA 84 89 406 Antisense
TGAAACGATCGCCTTGTCCGTTGTC 201 573 423 Antisense
ACAGCGAGCGATCCGTGGTACAAGA 523 107 490 Antisense
GAGACGCCACGTTGGATGAGCTGGA 175 395 524 Antisense
TCCCGCAACGTCGTCGGGTTCTGGA 488 595 699 Antisense
TGATTTTCCGGTTGGAGTCGCACCT 242 563 741 Antisense
GAGTGAGAAGGCTGTGCTCCGGGAT 391 401 831 Antisense
GTAACAAGTCCAAGGTTCTCTCTTC 391 461 881 Antisense
Sequence Source Affymetrix Proprietary Database