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[185395_at]

Description C17G10.1 /REP_DB=WormBase Gene ID /WP=CE01785 /TR=Q09973 /GB=AAB93451.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 83      6grp_total > 76      4grp_total > 41      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 551.6
(-1.1)
P 		521.9
(-3)
P 		617.8
(3)
P 		561.9
(-0.5)
P 		96
B 439.1
(-3)
P 		615.9
(3)
P 		492.9
(-1.2)
P 		599.5
(2.4)
P 		177
C 649.3
(2.5)
P 		659.8
(3)
P 		655.8
(2.8)
P 		545.1
(-3)
P 		115
avr 546.7
(-3) 		599.2
(3) 		588.8
(1.8) 		568.8
(-0.5) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 399
1 2 3 4 5 6 range
A 404.6
(-3)
P 		468
(-1.9)
P 		485.4
(-1.6)
P 		562
(-0.2)
P 		478.1
(-1.7)
P 		744
(3)
P 		339
B 498.1
(-0.6)
P 		524.5
(0.2)
P 		422.8
(-3)
P 		480.9
(-1.1)
P 		587.9
(2.3)
P 		610.9
(3)
P 		188
C 383.3
(-3)
P 		424.4
(-2.4)
P 		518
(-1)
P 		464.2
(-1.8)
P 		423.1
(-2.4)
P 		781.8
(3)
P 		399
avr 428.7
(-3) 		472.3
(-2.1) 		475.4
(-2) 		502.4
(-1.4) 		496.4
(-1.6) 		712.2
(3) 		284
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 200.8
(3)
P 		113.3
(-1.4)
P 		161.5
(1)
P 		82.2
(-3)
P 		119
B 140
(1.1)
P 		152.1
(3)
P 		114.2
(-3)
P 		127.8
(-0.8)
P 		38
C 214.9
(2.4)
P 		189.7
(1.3)
P 		228.6
(3)
P 		91.9
(-3)
P 		137
avr 185.2
(3) 		151.7
(0.6) 		168.1
(1.8) 		100.6
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 74.6
(-3)
P 		166.4
(2.2)
P 		105.7
(-1.2)
P 		142.5
(0.8)
P 		144.3
(0.9)
P 		181.1
(3)
P 		107
B 173.3
(0.1)
P 		174.6
(0.2)
P 		102.7
(-3)
P 		127.4
(-1.9)
P 		238.8
(3)
P 		227.8
(2.5)
P 		136
C 142.1
(-1.3)
P 		129.5
(-1.7)
P 		131.8
(-1.6)
P 		93.4
(-3)
P 		136.9
(-1.4)
P 		261.7
(3)
P 		168
avr 130
(-2.1) 		156.8
(-0.6) 		113.4
(-3) 		121.1
(-2.6) 		173.3
(0.3) 		223.5
(3) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185395_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4257
Sequence Type Exemplar sequence
Representative Public ID C17G10.1 NCBI
Target Description C17G10.1 /REP_DB=WormBase Gene ID /WP=CE01785 /TR=Q09973 /GB=AAB93451.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062687 NCBI Caenorhabditis elegans C17G10.1 (C17G10.1) mRNA, complete cds. 11/11 None
SNAP00000029024 ENSEMBL cdna:SNAP chromosome:CEL140:II:5596540:5598288:1 11/11 None
GENEFINDER00000029032 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5596540:5598288:1 11/11 None
C17G10.1.2 ENSEMBL cdna:known chromosome:CEL140:II:5596516:5598402:1 gene:C17G10.1 11/11 None
C17G10.1.1 ENSEMBL cdna:known chromosome:CEL140:II:5596529:5598407:1 gene:C17G10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5596537-5598286(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17G10.1
Entrez Gene 173947 Entrez gene
SwissProt Q09973 EMBL-EBI
WormBase CE01785 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585939_AT similar to CG31120-PA, isoform A cfa
CANINE_2:CFA.6487.1.A1_S_AT similar to CG31120-PA, isoform A cfa
CHICKEN:GGAAFFX.1937.1.S1_S_AT similar to KIAA1612 protein gga
HG-U133_PLUS_2:221090_S_AT hypothetical protein FLJ10826 hs
HG-U133A:221090_S_AT hypothetical protein FLJ10826 hs
HG-U133A_2:221090_S_AT hypothetical protein FLJ10826 hs
HG-U133_PLUS_2:225109_AT hypothetical protein FLJ10826 hs
HG-U133B:225109_AT hypothetical protein FLJ10826 hs
HU35KSUBA:RC_AA476604_F_AT hypothetical protein FLJ10826 hs
HU35KSUBA:RC_AA476604_I_AT hypothetical protein FLJ10826 hs
HU35KSUBB:RC_W49574_AT hypothetical protein FLJ10826 hs
U133_X3P:G8922693_3P_A_AT hypothetical protein FLJ10826 hs
U133_X3P:HS.24809.1.A3_3P_AT hypothetical protein FLJ10826 hs
U133_X3P:HS.24809.1.A2_3P_X_AT hypothetical protein FLJ10826 hs
U133_X3P:HS.24809.1.A2_3P_AT hypothetical protein FLJ10826 hs
U133_X3P:HS.24809.1.A1_3P_A_AT hypothetical protein FLJ10826 hs
U133_X3P:221090_3P_S_AT hypothetical protein FLJ10826 hs
U133_X3P:225110_3P_AT hypothetical protein FLJ10826 hs
HG-U133_PLUS_2:225106_S_AT hypothetical protein FLJ10826 hs
HG-U133B:225106_S_AT hypothetical protein FLJ10826 hs
HG-U133_PLUS_2:225110_AT hypothetical protein FLJ10826 hs
HG-U133B:225110_AT hypothetical protein FLJ10826 hs
HG-U95B:49211_S_AT hypothetical protein FLJ10826 hs
HG-U95C:60897_AT hypothetical protein FLJ10826 hs
HG-U95E:80882_AT hypothetical protein FLJ10826 hs
HG-U133_PLUS_2:241739_AT Hypothetical protein FLJ10826 hs
HG-U133B:241739_AT Hypothetical protein FLJ10826 hs
HG-U95D:73823_AT Hypothetical protein FLJ10826 hs
HU35KSUBC:RC_N51445_AT Hypothetical protein FLJ10826 hs
U133_X3P:HS.231883.0.A1_3P_AT Hypothetical protein FLJ10826 hs
U133_X3P:HS.231883.0.A1_3P_X_AT Hypothetical protein FLJ10826 hs
MG-U74BV2:109562_AT RIKEN cDNA 4930415J21 gene mm
MG-U74BV2:116697_AT RIKEN cDNA 4930415J21 gene mm
MG-U74CV2:167881_AT RIKEN cDNA 4930415J21 gene mm
MOE430B:1435025_AT RIKEN cDNA 4930415J21 gene mm
MOUSE430_2:1435025_AT RIKEN cDNA 4930415J21 gene mm
MOE430B:1439776_AT RIKEN cDNA 4930415J21 gene mm
MOUSE430_2:1439776_AT RIKEN cDNA 4930415J21 gene mm
MU19KSUBC:TC35019_AT RIKEN cDNA 4930415J21 gene mm
MG-U74CV2:129543_AT RIKEN cDNA 4930415J21 gene (4930415J21Rik), mRNA mm
MOE430B:1448096_AT RIKEN cDNA 4930415J21 gene (4930415J21Rik), mRNA mm
MOUSE430_2:1448096_AT RIKEN cDNA 4930415J21 gene (4930415J21Rik), mRNA mm
MU19KSUBC:TC37364_AT RIKEN cDNA 4930415J21 gene (4930415J21Rik), mRNA mm
RAE230B:1384757_AT similar to mKIAA1612 protein (predicted) rn
RAT230_2:1384757_AT similar to mKIAA1612 protein (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
19538 protein metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
16706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB93451 Hypothetical protein C17G10.1 [Caenorhabditis elegans] ref|NP_495088.1| C17G10.1 [Caenorhabditis elegans] 0.0
blast CAE59148 Hypothetical protein CBG02453 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005123 EMBL-EBI 2OG-Fe(II) oxygenase superfamily 1.7E-9
Sequence
Target Sequence 
>C. ELEGANS:185395_AT
ttccaacccatcttgctttgaaactgttggcccggttagcaaacgccacgttgcacgtct
tgatgaagaaaaatctgcggatctgcagaatactaaaagaataattcaatgtctgaagtc
caaaaattttgcaaaactggcagccaaactgactggagttacagtaaccggagctcaaac
aagtgttaaagttagtcgtgtggagcatggaacatattgggttctgggagatgaagatgc
tgaacaaagttcaactgatggatactgtctggatgttcacctattcgtacagaaaaccaa
ttgggatgatgaagctggtggtgacctgatttacatcgaagaaggtgatacggaagagct
cctacgaatttccccatcaccaaacgccgcatcaatagtgttccgtgagcctggtgtgat
atcgtttatgaaatacgccaattgcaaatcatctgatccgttcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCAACCCATCTTGCTTTGAAACT 23 701 945 Antisense
TTGAAACTGTTGGCCCGGTTAGCAA 656 699 962 Antisense
GGTTAGCAAACGCCACGTTGCACGT 625 505 978 Antisense
AACTGGCAGCCAAACTGACTGGAGT 53 143 1079 Antisense
GTTCAACTGATGGATACTGTCTGGA 571 445 1193 Antisense
CTGTCTGGATGTTCACCTATTCGTA 328 239 1209 Antisense
CTGGTGGTGACCTGATTTACATCGA 520 239 1259 Antisense
ATACGGAAGAGCTCCTACGAATTTC 679 21 1292 Antisense
CATCACCAAACGCCGCATCAATAGT 17 213 1319 Antisense
AATAGTGTTCCGTGAGCCTGGTGTG 688 169 1338 Antisense
TGCAAATCATCTGATCCGTTCTTCC 435 577 1387 Antisense
Sequence Source Affymetrix Proprietary Database