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[185394_at]

Description F21C10.6 /REP_DB=WormBase Gene ID /WP=CE07121 /TR=Q19664 /GB=AAA97974.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 71.4
(-2.3)
A 		108
(-0.5)
A 		56.3
(-3)
M 		180
(3)
P 		124
B 81
(3)
P 		56.4
(-3)
A 		67.8
(-0.2)
M 		81
(3)
P 		25
C 74.5
(-2.4)
P 		70.9
(-2.9)
P 		69.9
(-3)
A 		115.5
(3)
P 		46
avr 75.6
(-1.9) 		78.4
(-1.6) 		64.7
(-3) 		125.5
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 73.9
(0.9)
A 		54.6
(-2)
A 		88.2
(3)
A 		60.2
(-1.2)
A 		75.8
(1.1)
P 		48.2
(-3)
A 		40
B 73.8
(0.8)
A 		72.1
(0.7)
P 		56.5
(-0.6)
P 		28.3
(-3)
A 		99.4
(3)
M 		49.8
(-1.2)
P 		71
C 55.3
(-3)
A 		123
(3)
P 		68.1
(-1.9)
A 		83.6
(-0.5)
A 		67.6
(-1.9)
A 		73.6
(-1.4)
P 		68
avr 67.7
(-0.6) 		83.2
(3) 		70.9
(0.2) 		57.4
(-3) 		80.9
(2.5) 		57.2
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 26
(2.8)
A 		23.4
(1.5)
A 		14.7
(-3)
M 		26.4
(3)
P 		12
B 25.8
(3)
P 		13.9
(-3)
A 		15.7
(-2.1)
M 		17.3
(-1.3)
P 		12
C 24.7
(3)
P 		20.4
(-2)
P 		24.4
(2.7)
A 		19.5
(-3)
P 		5
avr 25.5
(3) 		19.2
(-2.3) 		18.3
(-3) 		21.1
(-0.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 13.6
(-2)
A 		19.4
(1.1)
A 		19.2
(1)
A 		15.3
(-1.1)
A 		22.9
(3)
P 		11.7
(-3)
A 		11
B 25.7
(0.3)
A 		24
(0)
P 		13.7
(-1.9)
P 		7.5
(-3)
A 		40.4
(3)
M 		18.6
(-1)
P 		33
C 20.5
(-1.9)
A 		37.5
(3)
P 		17.3
(-2.9)
A 		16.8
(-3)
A 		21.9
(-1.5)
A 		24.6
(-0.7)
P 		21
avr 19.9
(-0.4) 		27
(2.4) 		16.7
(-1.6) 		13.2
(-3) 		28.4
(3) 		18.3
(-1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185394_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12037
Sequence Type Exemplar sequence
Representative Public ID F21C10.6 NCBI
Target Description F21C10.6 /REP_DB=WormBase Gene ID /WP=CE07121 /TR=Q19664 /GB=AAA97974.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072963(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072963 NCBI Caenorhabditis elegans F21C10.6 (F21C10.6) mRNA, complete cds. 11/11 None
SNAP00000042380 ENSEMBL cdna:SNAP chromosome:CEL140:V:9127066:9127580:1 11/11 None
F21C10.6 ENSEMBL cdna:known chromosome:CEL140:V:9127066:9127580:1 gene:F21C10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042386 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9127066-9127581(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21C10.6
Entrez Gene 184766 Entrez gene
SwissProt Q19664 EMBL-EBI
WormBase CE07121 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97974 Hypothetical protein F21C10.6 [Caenorhabditis elegans] ref|NP_505364.1| F21C10.6 [Caenorhabditis elegans] 2.0E-82
blast CAE72105 Hypothetical protein CBG19197 [Caenorhabditis briggsae] 5.0E-42
blast CAE72106 Hypothetical protein CBG19198 [Caenorhabditis briggsae] 4.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 6.0E-37
Sequence
Target Sequence 
>C. ELEGANS:185394_AT
tctgttgcattgtttcggttcgctttcttggttcctggaatactaactcaaaatagtgcg
agcttaaaccgtcatcaaggacatagaaccagttcttctttccgacactcggcatttact
aaatctgccaaaacgcacgtgctccaacattcgacgagatccaaagtcattatcacacca
tcacttccaatcaaatacaataagatcaagtattattggtatgggaactacgtctacgat
gccggtcatccatctaaatgtgaatatcacattgatgagactgatcgtgaatttcgaaat
gtgacattcccggatggttcaaagccaccgtcacttcaattcggatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGTTGCATTGTTTCGGTTCGCTT 335 607 19 Antisense
TAGTGCGAGCTTAAACCGTCATCAA 25 655 72 Antisense
CATAGAACCAGTTCTTCTTTCCGAC 14 215 100 Antisense
TCCGACACTCGGCATTTACTAAATC 349 595 119 Antisense
TAAATCTGCCAAAACGCACGTGCTC 249 641 138 Antisense
CACGTGCTCCAACATTCGACGAGAT 395 195 154 Antisense
AAGTCATTATCACACCATCACTTCC 403 157 182 Antisense
TGGGAACTACGTCTACGATGCCGGT 226 495 240 Antisense
ATGCCGGTCATCCATCTAAATGTGA 621 41 257 Antisense
TCCCGGATGGTTCAAAGCCACCGTC 708 523 326 Antisense
AGCCACCGTCACTTCAATTCGGATG 374 83 341 Antisense
Sequence Source Affymetrix Proprietary Database