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[185393_s_at]

Description Y47D3B.2A /REP_DB=WormBase Gene ID /WP=CE19175 /TR=Q9XX02 /GB=CAA21040.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 44      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 86      6grp_total > 01      4grp_total > 12      6grp_cgc > 54      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1763
1 2 3 4 range
A 975.1
(-0.7)
P 		522.3
(-2.3)
P 		312.2
(-3)
P 		2075.1
(3)
P 		1763
B 831.1
(-0.9)
P 		438.5
(-2.5)
P 		330.1
(-3)
P 		1735.6
(3)
P 		1406
C 977.4
(-0.6)
P 		525.4
(-2.3)
P 		355.1
(-3)
P 		1925.8
(3)
P 		1571
avr 927.9
(-0.7) 		495.4
(-2.4) 		332.5
(-3) 		1912.2
(3) 		1580

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 796
1 2 3 4 5 6 range
A 930.5
(0.3)
P 		912.1
(0.2)
P 		1196.8
(3)
P 		594.5
(-3)
P 		1033
(1.4)
P 		758
(-1.4)
P 		602
B 1114.8
(-1.3)
P 		1390.7
(3)
P 		1067.7
(-2)
P 		1005.5
(-3)
P 		1178.8
(-0.3)
P 		1147.4
(-0.8)
P 		385
C 844.3
(-0.9)
P 		1119
(2.5)
P 		756.4
(-2)
P 		1098.9
(2.3)
P 		680.5
(-3)
P 		1156.5
(3)
P 		476
avr 963.2
(-1.4) 		1140.6
(3) 		1007
(-0.3) 		899.6
(-3) 		964.1
(-1.4) 		1020.6
(0) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 355
(3)
P 		113.4
(-2.3)
P 		81.6
(-3)
P 		303.8
(1.9)
P 		273
B 265
(0.9)
P 		108.3
(-2.3)
P 		76.5
(-3)
P 		369.9
(3)
P 		293
C 323.6
(3)
P 		151.1
(-2.2)
P 		123.7
(-3)
P 		324.7
(3)
P 		201
avr 314.5
(2.5) 		124.3
(-2.2) 		93.9
(-3) 		332.8
(3) 		239

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 171.5
(-2.3)
P 		324.4
(3)
P 		260.6
(0.8)
P 		150.8
(-3)
P 		311.7
(2.6)
P 		184.6
(-1.8)
P 		174
B 387.9
(0.5)
P 		462.9
(2.6)
P 		259.3
(-3)
P 		266.3
(-2.8)
P 		478.9
(3)
P 		427.8
(1.6)
P 		220
C 312.9
(0.7)
P 		341.4
(1.6)
P 		192.5
(-3)
P 		221
(-2.1)
P 		220.2
(-2.1)
P 		387.1
(3)
P 		195
avr 290.8
(-0.1) 		376.2
(3) 		237.5
(-2.1) 		212.7
(-3) 		336.9
(1.6) 		333.2
(1.4) 		164
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185393_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7322
Sequence Type Exemplar sequence
Representative Public ID Y47D3B.2A NCBI
Target Description Y47D3B.2A /REP_DB=WormBase Gene ID /WP=CE19175 /TR=Q9XX02 /GB=CAA21040.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067066(11), NM_067065(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067066 NCBI Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-21) (nlp-21) mRNA, complete cds. 11/11 None
NM_067065 NCBI Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-21) (nlp-21) mRNA, complete cds. 11/11 None
Y47D3B.2b ENSEMBL cdna:known chromosome:CEL140:III:11388567:11393130:-1 gene:Y47D3B.2 11/11 None
Y47D3B.2a ENSEMBL cdna:known chromosome:CEL140:III:11388591:11393060:-1 gene:Y47D3B.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004528 8/11 Cross Hyb Matching Probes None
SNAP00000004511 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11388601-11393056(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y47D3B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21040 Hypothetical protein Y47D3B.2a [Caenorhabditis elegans] ref|NP_499466.1| Neuropeptide-Like Protein family member (nlp-21) [Caenorhabditis elegans] 4.0E-83
blast CAB54383 Hypothetical protein Y47D3B.2b [Caenorhabditis elegans] ref|NP_499467.1| Neuropeptide-Like Protein family member (nlp-21) [Caenorhabditis elegans] 7.0E-74
blast CAA21040 Hypothetical protein Y47D3B.2a [Caenorhabditis elegans] ref|NP_499466.1| Neuropeptide-Like Protein family member (nlp-21) [Caenorhabditis elegans] 5.0E-72
blast CAB54383 Hypothetical protein Y47D3B.2b [Caenorhabditis elegans] ref|NP_499467.1| Neuropeptide-Like Protein family member (nlp-21) [Caenorhabditis elegans] 9.0E-72
blast CAE67717 Hypothetical protein CBG13292 [Caenorhabditis briggsae] 3.0E-71
Sequence
Target Sequence 
>C. ELEGANS:185393_S_AT
tgcgtaattcacttttcactacattattcttcggactagcagcgcttgtcatggtgctca
acgcccaatacacttccgaactcgaggaggacgagaagcgcggcggagcccgtgcgatgt
tacacaaacgtggcggagcccgagcattctcagccgacgtgggtgacgactacaagcgag
gtggcgctcgtgcgttctacgacgagaagcgtggcggtgcacgagcctttttgaccgaga
tgaaacgtggcggagctcgagttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGTAATTCACTTTTCACTACATT 293 579 14 Antisense
ATTATTCTTCGGACTAGCAGCGCTT 234 13 36 Antisense
TAGCAGCGCTTGTCATGGTGCTCAA 304 651 50 Antisense
CCCAATACACTTCCGAACTCGAGGA 595 257 77 Antisense
GAGCCCGTGCGATGTTACACAAACG 287 385 119 Antisense
TACACAAACGTGGCGGAGCCCGAGC 481 641 134 Antisense
ATTCTCAGCCGACGTGGGTGACGAC 658 9 159 Antisense
GGTGACGACTACAAGCGAGGTGGCG 264 499 175 Antisense
GCGCTCGTGCGTTCTACGACGAGAA 517 285 197 Antisense
TGCACGAGCCTTTTTGACCGAGATG 153 575 231 Antisense
GAAACGTGGCGGAGCTCGAGTTTTC 625 355 255 Antisense
Sequence Source Affymetrix Proprietary Database