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[185392_at]

Description F22E5.11 /REP_DB=WormBase Gene ID /WP=CE09563 /TR=O16708 /GB=AAB66175.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 35.5
(-0.1)
A 		67.6
(3)
A 		4.5
(-3)
A 		56.2
(1.9)
A 		63
B 7.7
(-2.7)
A 		41.5
(1.4)
A 		5.1
(-3)
A 		55.3
(3)
A 		50
C 57
(3)
A 		14.5
(-2.8)
A 		17.8
(-2.3)
A 		12.9
(-3)
A 		44
avr 33.4
(1.5) 		41.2
(2.9) 		9.1
(-3) 		41.5
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 79.3
(3)
A 		18.6
(-2)
A 		6
(-3)
A 		46
(0.3)
A 		39.8
(-0.2)
A 		35.8
(-0.6)
A 		73
B 33
(0.5)
A 		3.9
(-3)
A 		49.8
(2.5)
A 		45.9
(2)
A 		54
(3)
A 		23.9
(-0.6)
A 		50
C 37.1
(1.3)
A 		44.6
(2.9)
A 		41.4
(2.2)
A 		45.2
(3)
A 		17.4
(-3)
A 		40
(1.9)
A 		28
avr 49.8
(3) 		22.4
(-3) 		32.4
(-0.8) 		45.7
(2.1) 		37.1
(0.2) 		33.2
(-0.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 12.9
(2.2)
A 		14.7
(3)
A 		1.2
(-3)
A 		8.2
(0.1)
A 		14
B 2.5
(-2.3)
A 		10.2
(2.1)
A 		1.2
(-3)
A 		11.8
(3)
A 		11
C 18.9
(3)
A 		4.2
(-2.3)
A 		6.2
(-1.6)
A 		2.2
(-3)
A 		17
avr 11.4
(3) 		9.7
(1.8) 		2.9
(-3) 		7.4
(0.2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 14.6
(3)
A 		6.6
(-0.6)
A 		1.3
(-3)
A 		11.7
(1.7)
A 		12
(1.8)
A 		8.7
(0.3)
A 		13
B 11.5
(-0)
A 		1.3
(-3)
A 		12.1
(0.1)
A 		12.2
(0.2)
A 		22
(3)
A 		8.9
(-0.8)
A 		21
C 13.7
(3)
A 		13.6
(2.9)
A 		10.5
(0.6)
A 		9.1
(-0.4)
A 		5.6
(-3)
A 		13.4
(2.8)
A 		8
avr 13.3
(3) 		7.2
(-3) 		8
(-2.2) 		11
(0.7) 		13.2
(2.9) 		10.3
(0) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185392_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4692
Sequence Type Exemplar sequence
Representative Public ID F22E5.11 NCBI
Target Description F22E5.11 /REP_DB=WormBase Gene ID /WP=CE09563 /TR=O16708 /GB=AAB66175.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061916(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061916 NCBI Caenorhabditis elegans F22E5.11 (F22E5.11) mRNA, complete cds. 11/11 None
SNAP00000023606 ENSEMBL cdna:SNAP chromosome:CEL140:II:2643686:2644332:-1 9/11 None
GENEFINDER00000023629 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2643686:2646844:-1 11/11 None
F22E5.11 ENSEMBL cdna:known chromosome:CEL140:II:2643686:2645704:-1 gene:F22E5.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2643684-2645943(-) 91.85 100.0
Public Domain and Genome References
Gene Title
Ensembl F22E5.11
Entrez Gene 184839 Entrez gene
SwissProt O16708 EMBL-EBI
WormBase CE36832 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494317 F22E5.11 [Caenorhabditis elegans] gb|AAB66175.2| Hypothetical protein F22E5.11 [Caenorhabditis elegans] 1.0E-159
blast NP_494317 F22E5.11 [Caenorhabditis elegans] gb|AAB66175.2| Hypothetical protein F22E5.11 [Caenorhabditis elegans] 1.0E-142
blast NP_494317 F22E5.11 [Caenorhabditis elegans] gb|AAB66175.2| Hypothetical protein F22E5.11 [Caenorhabditis elegans] 3.0E-82
blast AAB37943 Hypothetical protein ZC239.2 [Caenorhabditis elegans] ref|NP_494478.1| ZC239.2 [Caenorhabditis elegans] 9.0E-67
blast AAB37943 Hypothetical protein ZC239.2 [Caenorhabditis elegans] ref|NP_494478.1| ZC239.2 [Caenorhabditis elegans] 1.0E-66
blast NP_494318 F22E5.12 [Caenorhabditis elegans] gb|AAB66176.1| Hypothetical protein F22E5.12 [Caenorhabditis elegans] 1.0E-63
blast AAB37943 Hypothetical protein ZC239.2 [Caenorhabditis elegans] ref|NP_494478.1| ZC239.2 [Caenorhabditis elegans] 3.0E-51
blast AAB66106 Hypothetical protein K02F6.8 [Caenorhabditis elegans] ref|NP_494291.1| K02F6.8 [Caenorhabditis elegans] 5.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.1E-36
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 3.4E-38
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.1E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494317.2 1 56-78
F22E5.11 1 56-78
Sequence
Target Sequence 
>C. ELEGANS:185392_AT
tttgcctacggctcgaattttcatcgatcgtccttacaaacactttgagaccattctcaa
ctttttgcgagatggagacgtgattcttcccgaatctatggagagcctcaaagaacttct
ccatgaagcgatcctctataagttgtcagggttgagtgaaaaatgtcaagaggcgattgc
aagattgggtagagagccaattcctgtacttccgtctaaaatcgagaaaactgcaacacc
accaactattggagatcctgtaacaagctcatcagacagcacagagtcacctctgatccc
tgaacagcctgacaacaacgagattcaaaaaagctggatacgcgaaaagataatgaacat
agttaatactacgttcaacttgatttcgaaatgccgagagtttctcgaggcggtggaaga
tgtacttcgctttgtggaaggaaacattgacccgatatcttcaactgctggcaacatcat
ccgactccttcaattggttggacagcttcgcatcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCCTACGGCTCGAATTTTCATC 697 667 435 Antisense
GACGTGATTCTTCCCGAATCTATGG 377 377 511 Antisense
TTCTCCATGAAGCGATCCTCTATAA 9 695 551 Antisense
GTAGAGAGCCAATTCCTGTACTTCC 447 457 623 Antisense
ATTCCTGTACTTCCGTCTAAAATCG 687 7 634 Antisense
GATCCTGTAACAAGCTCATCAGACA 693 415 688 Antisense
CAGCACAGAGTCACCTCTGATCCCT 56 205 711 Antisense
GAGAGTTTCTCGAGGCGGTGGAAGA 169 381 830 Antisense
ATTGACCCGATATCTTCAACTGCTG 614 5 880 Antisense
TCAACTGCTGGCAACATCATCCGAC 356 631 895 Antisense
ATTGGTTGGACAGCTTCGCATCTTT 700 1 927 Antisense
Sequence Source Affymetrix Proprietary Database