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[185390_at]

Description F49D11.6 /REP_DB=WormBase Gene ID /WP=CE17080 /TR=O44721 /GB=AAB96712.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 6.8
(-3)
A 		107
(3)
A 		58
(0.1)
A 		96.4
(2.4)
A 		100
B 30.8
(-3)
A 		114.5
(3)
A 		64.8
(-0.6)
A 		50.7
(-1.6)
A 		84
C 25
(-3)
A 		153.3
(3)
A 		75.6
(-0.6)
A 		106.8
(0.8)
A 		128
avr 20.9
(-3) 		124.9
(3) 		66.1
(-0.4) 		84.6
(0.7) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 56.4
(-3)
A 		113.9
(-0.5)
A 		194.6
(3)
P 		126.1
(0)
P 		165.8
(1.7)
A 		107.9
(-0.8)
A 		138
B 28.6
(-3)
A 		111.8
(-0.7)
P 		242.2
(3)
P 		110.1
(-0.7)
A 		119.2
(-0.5)
P 		71.3
(-1.8)
P 		214
C 33.8
(-3)
A 		171.4
(3)
A 		163.2
(2.6)
P 		93
(-0.4)
A 		90.2
(-0.5)
P 		119.1
(0.7)
A 		138
avr 39.6
(-3) 		132.4
(0.5) 		200
(3) 		109.7
(-0.4) 		125.1
(0.2) 		99.4
(-0.8) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 2.5
(-3)
A 		23.2
(3)
A 		15.2
(0.7)
A 		14.1
(0.4)
A 		21
B 9.8
(-3)
A 		28.3
(3)
A 		15
(-1.3)
A 		10.8
(-2.7)
A 		19
C 8.3
(-3)
A 		44.1
(3)
A 		26.4
(0)
A 		18
(-1.4)
A 		36
avr 6.9
(-3) 		31.9
(3) 		18.9
(-0.1) 		14.3
(-1.2) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 10.4
(-3)
A 		40.5
(1.6)
A 		42.4
(1.8)
P 		32
(0.3)
P 		50
(3)
A 		26.3
(-0.6)
A 		40
B 9.9
(-3)
A 		37.2
(0.3)
P 		58.8
(3)
P 		29.2
(-0.6)
A 		48.4
(1.7)
P 		26.6
(-1)
P 		49
C 12.5
(-3)
A 		52.3
(3)
A 		41.5
(1.4)
P 		18.7
(-2.1)
A 		29.2
(-0.5)
P 		39.9
(1.1)
A 		40
avr 10.9
(-3) 		43.3
(2.3) 		47.6
(3) 		26.6
(-0.4) 		42.5
(2.2) 		30.9
(0.3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185390_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1763
Sequence Type Exemplar sequence
Representative Public ID F49D11.6 NCBI
Target Description F49D11.6 /REP_DB=WormBase Gene ID /WP=CE17080 /TR=O44721 /GB=AAB96712.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060442(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060442 NCBI Caenorhabditis elegans F49D11.6 (F49D11.6) mRNA, complete cds. 11/11 None
SNAP00000015036 ENSEMBL cdna:SNAP chromosome:CEL140:I:10914937:10916670:-1 11/11 None
GENEFINDER00000015058 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10914937:10917213:-1 11/11 None
F49D11.6 ENSEMBL cdna:known chromosome:CEL140:I:10914937:10917213:-1 gene:F49D11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10914867-10917144(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49D11.6
Entrez Gene 186035 Entrez gene
SwissProt O44721 EMBL-EBI
WormBase CE17080 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96712 Hypothetical protein F49D11.6 [Caenorhabditis elegans] ref|NP_492843.1| F49D11.6 [Caenorhabditis elegans] 0.0
blast AAB96712 Hypothetical protein F49D11.6 [Caenorhabditis elegans] ref|NP_492843.1| F49D11.6 [Caenorhabditis elegans] 1.0E-173
blast AAB96712 Hypothetical protein F49D11.6 [Caenorhabditis elegans] ref|NP_492843.1| F49D11.6 [Caenorhabditis elegans] 1.0E-137
blast AAB96709 Hypothetical protein F49D11.3 [Caenorhabditis elegans] ref|NP_492846.1| F49D11.3 [Caenorhabditis elegans] 1.0E-130
blast AAB96709 Hypothetical protein F49D11.3 [Caenorhabditis elegans] ref|NP_492846.1| F49D11.3 [Caenorhabditis elegans] 1.0E-119
blast AAB96709 Hypothetical protein F49D11.3 [Caenorhabditis elegans] ref|NP_492846.1| F49D11.3 [Caenorhabditis elegans] 1.0E-103
blast CAE56341 Hypothetical protein CBG24013 [Caenorhabditis briggsae] 1.0E-101
blast CAE56341 Hypothetical protein CBG24013 [Caenorhabditis briggsae] 3.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492843.1 1 7-26
F49D11.6 1 7-26
GENEFINDER00000015058 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:185390_AT
ttaaaagacgatgccttgccgacgagtacaacttttattatccaacaaaggctctgaaaa
atgatttggaaactgttagatttgcattcattcgggatccgatccagagattcgtgtcac
tttatttggacaaatgcgtacatgaaaagcggtgctacaaatgcggaactgatatgagat
gcattgtggaaaatatttatttaaaattgaaagcagtacaagaaaatcaggataatatta
cagtcacatacatggaaggccacgctgctccgctatcttggaactgtgaatttaacacgg
acctttcgaaatggcaattactgatgatgggagcagattcatatgaaagaaattcctcga
ttctgcatttgacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAAAAGACGATGCCTTGCCGACGA 82 677 374 Antisense
ATGCCTTGCCGACGAGTACAACTTT 223 39 384 Antisense
GAGTACAACTTTTATTATCCAACAA 599 397 397 Antisense
GGGATCCGATCCAGAGATTCGTGTC 695 495 467 Antisense
GAGATTCGTGTCACTTTATTTGGAC 626 395 480 Antisense
AATGCGTACATGAAAAGCGGTGCTA 528 165 506 Antisense
AGCGGTGCTACAAATGCGGAACTGA 296 79 521 Antisense
ACATACATGGAAGGCCACGCTGCTC 521 105 619 Antisense
CTGCTCCGCTATCTTGGAACTGTGA 445 237 638 Antisense
AACACGGACCTTTCGAAATGGCAAT 398 135 667 Antisense
ATTCCTCGATTCTGCATTTGACAAC 661 7 725 Antisense
Sequence Source Affymetrix Proprietary Database