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[185389_at]

Description D2096.10 /REP_DB=WormBase Gene ID /WP=CE04308 /TR=Q19010 /GB=AAA81497.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 0      6grp_total > 35      4grp_total > 14      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 38.4
(-1.7)
P 		28.2
(-2.4)
A 		19.9
(-3)
A 		105.8
(3)
A 		86
B 60.9
(3)
P 		23.1
(-2.4)
A 		18.6
(-3)
A 		44.9
(0.7)
A 		42
C 77.9
(1.5)
P 		27.5
(-3)
A 		46.3
(-1.3)
P 		94.6
(3)
P 		67
avr 59.1
(0.5) 		26.3
(-3) 		28.3
(-2.8) 		81.8
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 40.9
(-3)
A 		66
(2.9)
P 		42.1
(-2.7)
A 		66.5
(3)
P 		43.5
(-2.4)
P 		41.7
(-2.8)
P 		26
B 53.1
(2.4)
P 		57.3
(3)
P 		44
(1.1)
P 		15.4
(-3)
A 		42.1
(0.8)
P 		42.3
(0.9)
P 		42
C 66.7
(3)
P 		61.7
(2)
P 		61.3
(1.9)
P 		37
(-3)
A 		41.4
(-2.1)
P 		61.5
(1.9)
P 		30
avr 53.6
(0.8) 		61.7
(3) 		49.1
(-0.4) 		39.6
(-3) 		42.3
(-2.3) 		48.5
(-0.6) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 14
(2.1)
P 		6.1
(-2.5)
A 		5.2
(-3)
A 		15.5
(3)
A 		10
B 19.4
(3)
P 		5.7
(-2.4)
A 		4.3
(-3)
A 		9.6
(-0.9)
A 		15
C 25.8
(3)
P 		7.9
(-3)
A 		16.1
(-0.3)
P 		15.9
(-0.3)
P 		18
avr 19.7
(3) 		6.6
(-3) 		8.5
(-2.1) 		13.7
(0.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 7.5
(-3)
A 		23.5
(3)
P 		9.2
(-2.4)
A 		16.9
(0.5)
P 		13.1
(-0.9)
P 		10.2
(-2)
P 		16
B 18.5
(2.8)
P 		19.1
(3)
P 		10.7
(-0.4)
P 		4.1
(-3)
A 		17.1
(2.2)
P 		15.8
(1.7)
P 		15
C 24.7
(3)
P 		18.8
(1)
P 		15.6
(-0.2)
P 		7.4
(-3)
A 		13.4
(-0.9)
P 		20.6
(1.6)
P 		17
avr 16.9
(1) 		20.5
(3) 		11.8
(-1.7) 		9.5
(-3) 		14.5
(-0.3) 		15.5
(0.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185389_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9432
Sequence Type Exemplar sequence
Representative Public ID D2096.10 NCBI
Target Description D2096.10 /REP_DB=WormBase Gene ID /WP=CE04308 /TR=Q19010 /GB=AAA81497.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069024(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069024 NCBI Caenorhabditis elegans D2096.10 (D2096.10) mRNA, complete cds. 9/11 None
GENEFINDER00000025685 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8386826:8388426:-1 10/11 None
D2096.10 ENSEMBL cdna:known chromosome:CEL140:IV:8387759:8388426:-1 gene:D2096.10 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025677 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8387764-8388432(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2096.10
Entrez Gene 183968 Entrez gene
SwissProt Q19010 EMBL-EBI
WormBase CE35264 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501425 D2096.10 [Caenorhabditis elegans] gb|AAA81497.2| Hypothetical protein D2096.10 [Caenorhabditis elegans] 2.0E-69
blast NP_501425 D2096.10 [Caenorhabditis elegans] gb|AAA81497.2| Hypothetical protein D2096.10 [Caenorhabditis elegans] 1.0E-46
blast NP_501417 D2096.5 [Caenorhabditis elegans] gb|AAA81489.2| Hypothetical protein D2096.5 [Caenorhabditis elegans] 3.0E-19
blast AAC05104 Hypothetical protein F17E9.4 [Caenorhabditis elegans] ref|NP_501413.1| F17E9.4 [Caenorhabditis elegans] 1.0E-18
blast AAC05104 Hypothetical protein F17E9.4 [Caenorhabditis elegans] ref|NP_501413.1| F17E9.4 [Caenorhabditis elegans] 1.0E-12
blast NP_501417 D2096.5 [Caenorhabditis elegans] gb|AAA81489.2| Hypothetical protein D2096.5 [Caenorhabditis elegans] 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:185389_AT
tctcgtcttcttgttggttcgactttcatctttgtgtgcttcttctctggtttcgaggtc
gatgccttgacaacaaaattccatttcaatggaactttaacctgtggcttcacattgaac
tcaaccaggatttggttccagaaattggttgtgtatgaagctgatagcctaagacctaat
atttttagatcggatgatctgcttggtgagacgattgaattcactaaatccaaaccaggt
tacggttacaaaattgattgtgaggatcatggagatggaatattggataataactatgaa
atttacttcctaatcacccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCGTCTTCTTGTTGGTTCGACTT 424 611 16 Antisense
TGGTTCGACTTTCATCTTTGTGTGC 647 549 30 Antisense
CTTCTTCTCTGGTTTCGAGGTCGAT 425 221 54 Antisense
GTTTCGAGGTCGATGCCTTGACAAC 514 449 65 Antisense
GGAACTTTAACCTGTGGCTTCACAT 558 529 106 Antisense
GTGGCTTCACATTGAACTCAACCAG 607 491 119 Antisense
GAACTCAACCAGGATTTGGTTCCAG 238 349 132 Antisense
GAAGCTGATAGCCTAAGACCTAATA 155 343 172 Antisense
GATCGGATGATCTGCTTGGTGAGAC 258 419 203 Antisense
GAATTCACTAAATCCAAACCAGGTT 81 325 232 Antisense
TGAAATTTACTTCCTAATCACCCAC 359 571 312 Antisense
Sequence Source Affymetrix Proprietary Database