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[185388_at]

Description ZK1290.7 /REP_DB=WormBase Gene ID /WP=CE02086 /TR=Q09634 /GB=AAB93314.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 1.5
(-3)
A 		1.7
(-3)
A 		4.3
(-2.7)
A 		51.5
(3)
A 		50
B 3.2
(-2.8)
A 		32.7
(3)
A 		3.4
(-2.8)
A 		2.3
(-3)
A 		30
C 2.6
(-3)
A 		3.3
(-2.9)
A 		3.2
(-2.9)
A 		40.2
(3)
A 		38
avr 2.4
(-3) 		12.6
(-0.9) 		3.6
(-2.8) 		31.3
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 51.2
(3)
A 		2.7
(-3)
A 		35.5
(1.1)
A 		16.4
(-1.3)
A 		4.3
(-2.8)
A 		22.5
(-0.6)
A 		49
B 2.9
(-3)
A 		2.9
(-3)
A 		41.6
(3)
A 		4.1
(-2.8)
A 		39.6
(2.7)
A 		3.2
(-3)
A 		39
C 4.5
(-1.4)
A 		13
(3)
A 		1.3
(-3)
A 		3.2
(-2)
A 		9.9
(1.4)
A 		3.3
(-2)
A 		12
avr 19.5
(1) 		6.2
(-3) 		26.1
(3) 		7.9
(-2.5) 		17.9
(0.5) 		9.7
(-1.9) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.6
(-2.8)
A 		0.4
(-3)
A 		1.1
(-2.4)
A 		7.5
(3)
A 		7
B 1
(-2.6)
A 		8.1
(3)
A 		0.8
(-2.8)
A 		0.5
(-3)
A 		8
C 0.9
(-3)
A 		0.9
(-3)
A 		1.1
(-2.8)
A 		6.8
(3)
A 		6
avr 0.8
(-3) 		3.1
(0.4) 		1
(-2.7) 		4.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.4
(3)
A 		1
(-3)
A 		7.7
(1.8)
A 		4.2
(-0.7)
A 		1.3
(-2.8)
A 		5.5
(0.2)
A 		8
B 1
(-3)
A 		1
(-3)
A 		10.1
(0.6)
A 		1.1
(-3)
A 		16.1
(3)
A 		1.2
(-2.9)
A 		15
C 1.7
(-0.7)
A 		4
(3)
A 		0.3
(-3)
A 		0.6
(-2.5)
A 		3.2
(1.7)
A 		1.1
(-1.7)
A 		4
avr 4
(-0.6) 		2
(-3) 		6
(1.9) 		2
(-3) 		6.9
(3) 		2.6
(-2.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185388_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4340
Sequence Type Exemplar sequence
Representative Public ID ZK1290.7 NCBI
Target Description ZK1290.7 /REP_DB=WormBase Gene ID /WP=CE02086 /TR=Q09634 /GB=AAB93314.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063175(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063175 NCBI Caenorhabditis elegans ZK1290.7 (ZK1290.7) mRNA, complete cds. 11/11 None
GENEFINDER00000002694 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7524407:7525392:-1 10/11 None
ZK1290.7 ENSEMBL cdna:known chromosome:CEL140:II:7524407:7525392:-1 gene:ZK1290.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7524403-7525389(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1290.7
Entrez Gene 191556 Entrez gene
SwissProt Q09634 EMBL-EBI
WormBase CE36070 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93314 Hypothetical protein ZK1290.7 [Caenorhabditis elegans] ref|NP_495576.2| ZK1290.7 [Caenorhabditis elegans] 1.0E-154
blast AAB93314 Hypothetical protein ZK1290.7 [Caenorhabditis elegans] ref|NP_495576.2| ZK1290.7 [Caenorhabditis elegans] 1.0E-114
blast CAE67528 Hypothetical protein CBG13050 [Caenorhabditis briggsae] 6.0E-50
blast CAE67528 Hypothetical protein CBG13050 [Caenorhabditis briggsae] 1.0E-39
blast CAE67397 Hypothetical protein CBG12883 [Caenorhabditis briggsae] 9.0E-22
blast AAC16984 Hypothetical protein C04F1.1 [Caenorhabditis elegans] ref|NP_491669.1| C04F1.1 [Caenorhabditis elegans] 1.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 5.6E-5
Sequence
Target Sequence 
>C. ELEGANS:185388_AT
ggaacaatttgactacaactgcagagtttctgaatcatgcaggtaatattagctcaaatt
gtaagattattcttgatttgaacattgtgaagcttagtgattcgaagttttatatttctc
ctcaagtgcaaaaatctttaacacatgccactgttggaatttcaaaggcttcctattata
aatatctttggagcgactcccaaactatcggaaagggaaagggaattatttcaaaaaatc
ggaaattattatcctgtcgcaattggtacaaaatcgggcctggtcaatgttacaatgaag
ccacattttattacagcatctggtttaatatattttttgatgaattacccaatatgttac
atcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACAATTTGACTACAACTGCAGA 51 529 65 Antisense
GCAGAGTTTCTGAATCATGCAGGTA 108 313 85 Antisense
GTTTTATATTTCTCCTCAAGTGCAA 362 449 171 Antisense
CAAAAATCTTTAACACATGCCACTG 248 191 193 Antisense
ACACATGCCACTGTTGGAATTTCAA 449 111 205 Antisense
TATAAATATCTTTGGAGCGACTCCC 264 661 241 Antisense
GAGCGACTCCCAAACTATCGGAAAG 30 385 255 Antisense
ATTATTATCCTGTCGCAATTGGTAC 443 13 309 Antisense
AAATCGGGCCTGGTCAATGTTACAA 682 115 335 Antisense
AAGCCACATTTTATTACAGCATCTG 68 149 362 Antisense
TGAATTACCCAATATGTTACATCGT 161 555 405 Antisense
Sequence Source Affymetrix Proprietary Database