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[185385_at]

Description Y38E10A.9 /REP_DB=WormBase Gene ID /WP=CE21589 /TR=Q9NAK2 /GB=CAB54400.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 4.2
(-3)
A 		5.5
(-2.2)
A 		5.6
(-2.1)
A 		13.6
(3)
A 		9
B 14.6
(3)
A 		8.7
(-1.7)
A 		7
(-3)
A 		8.1
(-2.1)
A 		8
C 6.5
(-2.8)
A 		57.1
(3)
A 		4.4
(-3)
A 		7.1
(-2.7)
A 		53
avr 8.4
(-2.1) 		23.8
(3) 		5.7
(-3) 		9.6
(-1.7) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 5.9
(-2.7)
A 		9.8
(-1.6)
A 		10.3
(-1.5)
A 		26.9
(3)
A 		4.8
(-3)
A 		23
(1.9)
A 		22
B 4.8
(-3)
A 		23.2
(-0.3)
A 		45.2
(3)
A 		12
(-1.9)
A 		43.2
(2.7)
A 		14.7
(-1.5)
A 		40
C 9.3
(-2.2)
A 		9
(-2.3)
A 		27.8
(3)
A 		8.5
(-2.5)
A 		24
(1.9)
A 		6.6
(-3)
A 		21
avr 6.7
(-3) 		14
(-0.9) 		27.8
(3) 		15.8
(-0.4) 		24
(1.9) 		14.8
(-0.7) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.5
(-0.8)
A 		1.2
(-3)
A 		1.5
(-0.8)
A 		2
(3)
A 		1
B 4.6
(3)
A 		2.1
(-2)
A 		1.6
(-3)
A 		1.7
(-2.8)
A 		3
C 2.2
(-2.6)
A 		16.4
(3)
A 		1.5
(-2.9)
A 		1.2
(-3)
A 		15
avr 2.8
(-1.5) 		6.6
(3) 		1.5
(-3) 		1.6
(-2.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.1
(-3)
A 		3.5
(-0.5)
A 		2.2
(-1.8)
A 		6.8
(3)
A 		1.5
(-2.6)
A 		5.6
(1.7)
A 		6
B 1.7
(-3)
A 		7.7
(-0.7)
A 		11
(0.5)
A 		3.2
(-2.4)
A 		17.5
(3)
A 		5.5
(-1.6)
A 		16
C 3.4
(-1.3)
A 		2.8
(-1.9)
A 		7.1
(2.3)
A 		1.7
(-3)
A 		7.8
(3)
A 		2.2
(-2.5)
A 		6
avr 2.1
(-3) 		4.7
(-0.7) 		6.8
(1.1) 		3.9
(-1.4) 		8.9
(3) 		4.4
(-1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185385_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3405
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.9 NCBI
Target Description Y38E10A.9 /REP_DB=WormBase Gene ID /WP=CE21589 /TR=Q9NAK2 /GB=CAB54400.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064291 NCBI Caenorhabditis elegans Y38E10A.9 (Y38E10A.9) mRNA, complete cds. 11/11 None
SNAP00000017432 ENSEMBL cdna:SNAP chromosome:CEL140:II:12608857:12609496:1 11/11 None
GENEFINDER00000017473 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12608857:12609496:1 11/11 None
Y38E10A.9 ENSEMBL cdna:known chromosome:CEL140:II:12608857:12609496:1 gene:Y38E10A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12608853-12609493(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.9
Entrez Gene 189656 Entrez gene
SwissProt Q9NAK2 EMBL-EBI
WormBase CE21589 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54400 Hypothetical protein Y38E10A.9 [Caenorhabditis elegans] ref|NP_496692.1| Y38E10A.9 [Caenorhabditis elegans] 2.0E-26
blast CAE17993 Hypothetical protein Y38E10A.25 [Caenorhabditis elegans] ref|NP_001022425.1| Y38E10A.25 [Caenorhabditis elegans] 2.0E-9
blast CAE65373 Hypothetical protein CBG10318 [Caenorhabditis briggsae] emb|CAE56968.1| Hypothetical protein CBG24819 [Caenorhabditis briggsae] 6.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR009853 EMBL-EBI Protein of unknown function DUF1412 4.6E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496692.1 1 5-24
Y38E10A.9 1 5-24
SNAP00000017432 1 5-24
GENEFINDER00000017473 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:185385_AT
tgttctcaaatctttttatcttccttgtactttcccttctcctgtctacagtatccgtat
ccgctggagctattcgtcagcgacgtgcaactccagagctattcaatccgaatggagtaa
ttgtgaatatggtgtcggatcctgtggctggaggaccaatggagatgggctggctccaag
taccacatattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCTCAAATCTTTTTATCTTCCT 167 563 14 Antisense
CTTCTCCTGTCTACAGTATCCGTAT 414 219 49 Antisense
CTCCTGTCTACAGTATCCGTATCCG 693 231 52 Antisense
GTATCCGCTGGAGCTATTCGTCAGC 402 455 70 Antisense
ATTCGTCAGCGACGTGCAACTCCAG 553 9 85 Antisense
GCAACTCCAGAGCTATTCAATCCGA 159 319 100 Antisense
GAATATGGTGTCGGATCCTGTGGCT 701 325 138 Antisense
GGATCCTGTGGCTGGAGGACCAATG 45 513 150 Antisense
AGGACCAATGGAGATGGGCTGGCTC 21 57 165 Antisense
GGAGATGGGCTGGCTCCAAGTACCA 437 517 174 Antisense
GCTGGCTCCAAGTACCACATATTGA 302 295 182 Antisense
Sequence Source Affymetrix Proprietary Database