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[185384_at]

Description Y57A10A.2 /REP_DB=WormBase Gene ID /WP=CE25504 /TR=Q9U214 /GB=CAB60764.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 06      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 39.7
(3)
A 		12
(-3)
A 		34.2
(1.8)
A 		35.7
(2.1)
A 		28
B 43.3
(-0.1)
A 		28.5
(-3)
A 		58.7
(3)
A 		46.8
(0.6)
M 		30
C 40.9
(-1.4)
A 		12.4
(-3)
A 		24.5
(-2.3)
A 		121.1
(3)
P 		109
avr 41.3
(-0.2) 		17.6
(-3) 		39.1
(-0.4) 		67.9
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 31.8
(-2)
A 		35.6
(-1.8)
A 		12
(-3)
A 		70.7
(0.1)
A 		125.7
(3)
A 		110.4
(2.2)
M 		114
B 7.2
(-3)
A 		12.8
(-2.7)
A 		10.8
(-2.8)
A 		81.4
(1.5)
A 		76.9
(1.3)
M 		105.3
(3)
P 		98
C 41.6
(-1.3)
A 		11.9
(-3)
A 		53.3
(-0.7)
A 		63.5
(-0.1)
A 		58.9
(-0.3)
P 		118.2
(3)
P 		106
avr 26.9
(-2.6) 		20.1
(-3) 		25.4
(-2.7) 		71.9
(0.4) 		87.2
(1.4) 		111.3
(3) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 14.5
(3)
A 		2.6
(-3)
A 		8.9
(0.2)
A 		5.2
(-1.7)
A 		12
B 13.8
(3)
A 		7
(-3)
A 		13.6
(2.8)
A 		10
(-0.4)
M 		7
C 13.5
(0.5)
A 		3.6
(-3)
A 		8.5
(-1.3)
A 		20.4
(3)
P 		17
avr 13.9
(3) 		4.4
(-3) 		10.3
(0.7) 		11.9
(1.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 5.9
(-2.4)
A 		12.6
(-1.3)
A 		2.6
(-3)
A 		17.9
(-0.4)
A 		37.9
(3)
A 		26.9
(1.1)
M 		35
B 2.5
(-3)
A 		4.3
(-2.7)
A 		2.6
(-3)
A 		21.6
(0.1)
A 		31.3
(1.7)
M 		39.3
(3)
P 		37
C 15.4
(-1)
A 		3.6
(-3)
A 		13.6
(-1.3)
A 		12.8
(-1.5)
A 		19.1
(-0.4)
P 		39.6
(3)
P 		36
avr 7.9
(-2.7) 		6.8
(-2.9) 		6.3
(-3) 		17.4
(-0.7) 		29.4
(1.8) 		35.3
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185384_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3336
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.2 NCBI
Target Description Y57A10A.2 /REP_DB=WormBase Gene ID /WP=CE25504 /TR=Q9U214 /GB=CAB60764.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064181
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000026042 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12147544:12150011:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064181 8/11 Cross Hyb Matching Probes None
SNAP00000026013 8/11 Cross Hyb Matching Probes None
Y57A10A.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12147540-12150008(+) 92.59 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T31624 hypothetical protein Y57A10A.b - Caenorhabditis elegans 0.0
blast CAB60764 Hypothetical protein Y57A10A.2 [Caenorhabditis elegans] ref|NP_496582.1| Y57A10A.2 [Caenorhabditis elegans] 1.0E-141
blast CAB55013 Hypothetical protein Y57A10A.8 [Caenorhabditis elegans] ref|NP_496588.2| Y57A10A.8 [Caenorhabditis elegans] 2.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 2.2E-10
Sequence
Target Sequence 
>C. ELEGANS:185384_AT
ggacgagatttggcatgacgacgatgaaattgaacacagtatttcgagttttcgagggaa
caccatcaattttcacgactttctgaagaaatttcggaaatttttgtgctatctagagat
tcccgagcttgatgggcttaaaagtcggattaatatatcgattgaaacaacgtcagatga
ggttaatcgaatagttattaccgggtctcgacacgacaagtttttgttagattcaaactg
gtatgcgcctttaaggagtactgtagtttcaaactattgcataaatattctcgaattcgc
cgatcttcataaaacgttcgaaacattcttcttcgggattaatcgaaaaattcgatctac
cgccgcggctaattctatgccgctcaatgtattcctcatcaaattcaaatgcttccttct
tggattgggttctccccagattttggattttcagcacatggttcaggctgagattgatga
tccgacagtcgtgaataagattcttcatctcaacgacatctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGAGATTTGGCATGACGACGAT 127 525 720 Antisense
AACACCATCAATTTTCACGACTTTC 50 137 778 Antisense
GAGATTCCCGAGCTTGATGGGCTTA 607 395 835 Antisense
TAGTTATTACCGGGTCTCGACACGA 496 649 911 Antisense
GATTCAAACTGGTATGCGCCTTTAA 302 431 949 Antisense
TATTCTCGAATTCGCCGATCTTCAT 59 663 1005 Antisense
GATCTACCGCCGCGGCTAATTCTAT 224 419 1073 Antisense
GCTAATTCTATGCCGCTCAATGTAT 572 301 1087 Antisense
GCTTCCTTCTTGGATTGGGTTCTCC 270 307 1130 Antisense
TGGGTTCTCCCCAGATTTTGGATTT 296 549 1145 Antisense
GATTCTTCATCTCAACGACATCTGC 562 431 1218 Antisense
Sequence Source Affymetrix Proprietary Database