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[185382_at]

Description Y70G10A.3 /REP_DB=WormBase Gene ID /WP=CE20352 /TR=Q9XWC5 /GB=CAA21751.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 143.2
(0.4)
A 		13.7
(-3)
A 		36.3
(-2.4)
A 		240.2
(3)
A 		227
B 124.8
(-1.5)
A 		95.7
(-2.2)
A 		63.1
(-3)
A 		314.7
(3)
P 		252
C 126.1
(-0.6)
A 		55.9
(-3)
A 		68.4
(-2.6)
A 		230.1
(3)
A 		174
avr 131.4
(-0.8) 		55.1
(-3) 		55.9
(-3) 		261.7
(3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 37.5
(-2.7)
A 		75.4
(-0.5)
A 		33.2
(-3)
A 		81.6
(-0.1)
A 		94.6
(0.6)
A 		134.6
(3)
A 		101
B 57.4
(-0.2)
A 		76.2
(1.4)
A 		22.8
(-3)
A 		43.2
(-1.3)
A 		37.5
(-1.8)
A 		96.2
(3)
A 		73
C 66.4
(0.7)
A 		57.6
(-0.5)
A 		40.3
(-3)
A 		53.6
(-1.1)
A 		57.2
(-0.6)
A 		82.1
(3)
A 		42
avr 53.8
(-1.2) 		69.7
(0.1) 		32.1
(-3) 		59.5
(-0.7) 		63.1
(-0.4) 		104.3
(3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 52.1
(3)
A 		3
(-3)
A 		9.5
(-2.2)
A 		35.2
(0.9)
A 		49
B 39.8
(-0.1)
A 		23.6
(-2)
A 		14.6
(-3)
A 		67.1
(3)
P 		53
C 41.7
(3)
A 		16.1
(-3)
A 		23.8
(-1.2)
A 		38.8
(2.3)
A 		26
avr 44.5
(2.5) 		14.2
(-3) 		16
(-2.7) 		47
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 6.9
(-3)
A 		26.8
(1.6)
A 		7.2
(-2.9)
A 		20.7
(0.2)
A 		28.6
(2)
A 		32.8
(3)
A 		26
B 20
(-0.1)
A 		25.4
(0.9)
A 		5.5
(-3)
A 		11.4
(-1.8)
A 		15.2
(-1.1)
A 		35.9
(3)
A 		30
C 24.6
(2)
A 		17.6
(-0.5)
A 		10.3
(-3)
A 		10.8
(-2.8)
A 		18.5
(-0.1)
A 		27.5
(3)
A 		17
avr 17.2
(-0.7) 		23.3
(0.8) 		7.7
(-3) 		14.3
(-1.4) 		20.8
(0.2) 		32.1
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185382_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7152
Sequence Type Exemplar sequence
Representative Public ID Y70G10A.3 NCBI
Target Description Y70G10A.3 /REP_DB=WormBase Gene ID /WP=CE20352 /TR=Q9XWC5 /GB=CAA21751.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066866(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066866 NCBI Caenorhabditis elegans Y70G10A.3 (Y70G10A.3) mRNA, complete cds. 11/11 None
SNAP00000003438 ENSEMBL cdna:SNAP chromosome:CEL140:III:10238993:10244327:1 11/11 None
GENEFINDER00000003442 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10238993:10244327:1 11/11 None
Y70G10A.3 ENSEMBL cdna:known chromosome:CEL140:III:10238993:10244327:1 gene:Y70G10A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10238988-10244323(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y70G10A.3
Entrez Gene 190573 Entrez gene
SwissProt Q9XWC5 EMBL-EBI
WormBase CE20352 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.19669.1.S1_AT similar to Solute carrier organic anion transporter family, member 4A1 (Solute carrier family 21, member 12) (Sodium-independent organic anion transporter E) (Organic anion transporting polypeptide E) (OATP-E) (Colon organic anion transporter) (Org... cfa
CANINE_2:CFAAFFX.19669.1.S1_S_AT similar to Solute carrier organic anion transporter family, member 4A1 (Solute carrier family 21, member 12) (Sodium-independent organic anion transporter E) (Organic anion transporting polypeptide E) (OATP-E) (Colon organic anion transporter) (Org... cfa
DROSOPHILA_2:1638360_AT Organic anion transporting polypeptide 26F dm
DROSGENOME1:151417_AT Organic anion transporting polypeptide 26F dm
DROSGENOME1:145915_AT Organic anion transporting polypeptide 26F dm
CHICKEN:GGA.6149.1.S1_S_AT solute carrier organic anion transporter family, member 4A1 gga
CHICKEN:GGAAFFX.11438.1.S1_S_AT solute carrier organic anion transporter family, member 4A1 gga
HG-U133_PLUS_2:219911_S_AT solute carrier organic anion transporter family, member 4A1 hs
HG-U133A:219911_S_AT solute carrier organic anion transporter family, member 4A1 hs
HG-FOCUS:219911_S_AT solute carrier organic anion transporter family, member 4A1 hs
HG-U133A_2:219911_S_AT solute carrier organic anion transporter family, member 4A1 hs
HU35KSUBB:RC_R83914_AT solute carrier organic anion transporter family, member 4A1 hs
U133_X3P:G7706516_3P_S_AT solute carrier organic anion transporter family, member 4A1 hs
HG-U95C:52468_I_AT solute carrier organic anion transporter family, member 4A1 hs
HG-U95C:52469_R_AT solute carrier organic anion transporter family, member 4A1 hs
HG-U95E:80421_S_AT solute carrier organic anion transporter family, member 4A1 hs
HG-U95E:87860_S_AT solute carrier organic anion transporter family, member 4A1 hs
HG-U95E:91846_AT solute carrier organic anion transporter family, member 4A1 hs
U133_X3P:HS2.211250.1.S1_3P_S_AT Solute carrier organic anion transporter family, member 4A1 hs
HG-U133_PLUS_2:1554332_A_AT Solute carrier organic anion transporter family, member 4A1 hs
HG-U133_PLUS_2:229239_X_AT Solute carrier organic anion transporter family, member 4A1 hs
HG-U133B:229239_X_AT Solute carrier organic anion transporter family, member 4A1 hs
HG-U95B:53786_AT Solute carrier organic anion transporter family, member 4A1 hs
HG-U95C:56160_AT Solute carrier organic anion transporter family, member 4A1 hs
HG-U95E:82499_AT Solute carrier organic anion transporter family, member 4A1 hs
HU35KSUBB:RC_T23657_S_AT Solute carrier organic anion transporter family, member 4A1 hs
HU35KSUBB:RC_AA085007_AT Solute carrier organic anion transporter family, member 4A1 hs
U133_X3P:HS.235782.3.A1_3P_AT Solute carrier organic anion transporter family, member 4A1 hs
MOE430B:1438160_X_AT solute carrier organic anion transporter family, member 4a1 mm
MOUSE430_2:1438160_X_AT solute carrier organic anion transporter family, member 4a1 mm
MOE430B:1455803_AT solute carrier organic anion transporter family, member 4a1 mm
MOUSE430_2:1455803_AT solute carrier organic anion transporter family, member 4a1 mm
MU19KSUBC:TC35529_AT Solute carrier organic anion transporter family, member 4a1 (Slco4a1), mRNA mm
RG-U34C:RC_AI180349_AT solute carrier organic anion transporter family, member 4a1 rn
RAE230A:1389067_AT solute carrier organic anion transporter family, member 4a1 rn
RAT230_2:1389067_AT solute carrier organic anion transporter family, member 4a1 rn
RAE230A:1369437_AT solute carrier organic anion transporter family, member 4a1 rn
RAT230_2:1369437_AT solute carrier organic anion transporter family, member 4a1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21751 Hypothetical protein Y70G10A.3 [Caenorhabditis elegans] ref|NP_499267.1| Y70G10A.3 [Caenorhabditis elegans] 0.0
blast CAE56174 Hypothetical protein CBG23794 [Caenorhabditis briggsae] 0.0
blast NP_057438 solute carrier organic anion transporter family member 4A1 [Homo sapiens] emb|CAC14920.1| SLC21A12 [Homo sapiens] gb|AAG43447.1| colon organic anion transporter [Homo sapiens] gb|AAG42204.1| organic anion transporter polypeptide-related protein 1 [Homo sapiens] sp|Q96BD0|SO4A1_HUMAN Solute carrier organic anion transporter family member 4A1 (Solute carrier family 21 member 12) (Sodium-independent organic anion transporter E) (Organic anion transporting polypeptide E) (OATP-E) (Colon organic anion transporter) (Organic anion transporter polypeptide-related protein 1) (OATP-RP1) (OATPRP1) (POAT) dbj|BAA89288.1| organic anion transporter OATP-E [Homo sapiens] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499267.1 12 51-73,88-110,117-139,178-200,213-235,264-286,333-355,370-392,399-421,531-553,573-595,622-644
Y70G10A.3 12 51-73,88-110,117-139,178-200,213-235,264-286,333-355,370-392,399-421,531-553,573-595,622-644
SNAP00000003438 12 51-73,88-110,117-139,178-200,213-235,264-286,333-355,370-392,399-421,531-553,573-595,622-644
GENEFINDER00000003442 12 51-73,88-110,117-139,178-200,213-235,264-286,333-355,370-392,399-421,531-553,573-595,622-644
Sequence
Target Sequence 
>C. ELEGANS:185382_AT
cagcacgttccataatctaatccatggaatcaaagagcatccagatgtccttaaccaggg
ttactgtcatcaagactgcggttatcgggagtacattctaatggttacacttttcatcac
agttgttgccagttttgcttccggaattccaactcagcaaatcatgctccgtgtggtccc
attcgatcaaagaactctggctctcggcgttaactggacatttgttcgtctgctcggatt
tattcccggaggaattctgttcggaattatcatcgataccgcctgtcttgaatggggcga
gagctgtggaaaagccacgtcatgtctggtgtatgacccgtttaagcttagttggactat
tactggacttgcaattgtttgtaaacttctatcaattctggctacaattatcggatatat
gacatatcgaccatcagacttggataatgcaggctcaattcaaacggtggacagtcactg
tcacacggctcttcatctcgtcgtaaacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCACGTTCCATAATCTAATCCAT 244 203 1524 Antisense
AGCATCCAGATGTCCTTAACCAGGG 120 79 1559 Antisense
CACAGTTGTTGCCAGTTTTGCTTCC 68 195 1641 Antisense
TTTGCTTCCGGAATTCCAACTCAGC 366 667 1657 Antisense
CGATCAAAGAACTCTGGCTCTCGGC 101 249 1707 Antisense
AACTGGACATTTGTTCGTCTGCTCG 504 143 1735 Antisense
GTCTGCTCGGATTTATTCCCGGAGG 302 471 1751 Antisense
TCGATACCGCCTGTCTTGAATGGGG 333 601 1796 Antisense
AAAGCCACGTCATGTCTGGTGTATG 329 125 1834 Antisense
TGGACAGTCACTGTCACACGGCTCT 17 549 1991 Antisense
GGCTCTTCATCTCGTCGTAAACGAC 532 539 2010 Antisense
Sequence Source Affymetrix Proprietary Database