[Home] | [Total List]

[185381_at]

Description Y38E10A.8 /REP_DB=WormBase Gene ID /WP=CE21588 /TR=Q9NAK3 /GB=CAB54399.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 01      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 4.2
(-3)
A 		12.5
(0.3)
A 		19.5
(3)
A 		10
(-0.7)
A 		15
B 20.8
(-0.4)
A 		2.9
(-3)
A 		6.2
(-2.5)
A 		44.1
(3)
A 		41
C 5.2
(-0.6)
A 		2.9
(-2.2)
A 		1.8
(-3)
A 		10.4
(3)
A 		9
avr 10.1
(-1.4) 		6.1
(-3) 		9.2
(-1.8) 		21.5
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 7
(-2.3)
A 		29.9
(3)
A 		5.5
(-2.6)
A 		24.4
(1.7)
A 		3.9
(-3)
A 		6.8
(-2.3)
A 		26
B 12
(0)
A 		21
(3)
A 		2.9
(-2.9)
A 		2.7
(-3)
A 		7.4
(-1.5)
A 		9.5
(-0.8)
A 		18
C 38.5
(3)
A 		3.5
(-2.9)
A 		14.8
(-1)
A 		3.1
(-2.9)
A 		8.4
(-2)
A 		2.7
(-3)
A 		36
avr 19.2
(3) 		18.1
(2.5) 		7.7
(-2.3) 		10.1
(-1.2) 		6.6
(-2.9) 		6.3
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.5
(-3)
A 		2.7
(-1)
A 		5.1
(3)
A 		1.5
(-3)
A 		4
B 6.6
(1.1)
A 		0.7
(-3)
A 		1.4
(-2.5)
A 		9.4
(3)
A 		9
C 1.7
(3)
A 		0.8
(-1.9)
A 		0.6
(-3)
A 		1.7
(3)
A 		1
avr 3.3
(1.1) 		1.4
(-3) 		2.4
(-0.9) 		4.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.3
(-2.9)
A 		10.6
(3)
A 		1.2
(-3)
A 		6.2
(0.2)
A 		1.2
(-3)
A 		1.7
(-2.7)
A 		9
B 4.2
(0.3)
A 		7
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		3
(-0.8)
A 		3.5
(-0.3)
A 		6
C 14.3
(3)
A 		1.1
(-2.8)
A 		3.8
(-1.6)
A 		0.6
(-3)
A 		2.7
(-2.1)
A 		0.9
(-2.9)
A 		14
avr 6.6
(3) 		6.2
(2.5) 		1.9
(-3) 		2.5
(-2.2) 		2.3
(-2.5) 		2
(-2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185381_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3480
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.8 NCBI
Target Description Y38E10A.8 /REP_DB=WormBase Gene ID /WP=CE21588 /TR=Q9NAK3 /GB=CAB54399.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064290(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064290 NCBI Caenorhabditis elegans Y38E10A.8 (Y38E10A.8) mRNA, complete cds. 11/11 None
SNAP00000017431 ENSEMBL cdna:SNAP chromosome:CEL140:II:12607101:12608579:1 10/11 None
GENEFINDER00000017472 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12607101:12608579:1 11/11 None
Y38E10A.8 ENSEMBL cdna:known chromosome:CEL140:II:12607101:12608579:1 gene:Y38E10A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12607097-12608576(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.8
Entrez Gene 189655 Entrez gene
SwissProt Q9NAK3 EMBL-EBI
WormBase CE21588 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54399 Hypothetical protein Y38E10A.8 [Caenorhabditis elegans] ref|NP_496691.1| Y38E10A.8 [Caenorhabditis elegans] 1.0E-151
blast CAB54399 Hypothetical protein Y38E10A.8 [Caenorhabditis elegans] ref|NP_496691.1| Y38E10A.8 [Caenorhabditis elegans] 1.0E-125
blast CAE65371 Hypothetical protein CBG10316 [Caenorhabditis briggsae] 1.0E-84
blast CAE65371 Hypothetical protein CBG10316 [Caenorhabditis briggsae] 7.0E-82
blast CAE56966 Hypothetical protein CBG24817 [Caenorhabditis briggsae] 2.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 3.7E-25
Pfam IPR000719 EMBL-EBI Protein kinase 4.4E-17
Pfam IPR000719 EMBL-EBI Protein kinase 7.9E-10
Pfam IPR000719 EMBL-EBI Protein kinase 4.0E-19
Sequence
Target Sequence 
>C. ELEGANS:185381_AT
gtcactctggctacattttctttgatgaagtgttttggaaagagcacaagacgggctcgg
caggacatatgtacatttgcatggagctctgtgagcagaacaccttgaaggattggatta
aagggaatcgaacggcaagaagtcgaccctggatgttgatgaaagactggataaagcagc
tcgcatttgaagccagagatgtattttttgcaagagattcgcagtttaagaagttgaaga
ttggggattttggtctgaccacaagggcaattgaagggctgaaagattggaagcaaagaa
cacaatcccaagaggccggtcaaaaccacacagcgggggcgggtacgcccagttacatgg
cgcctgaacaaatccgcaaccagtacaacgagaaagtggatatcttcgcgctggggctaa
tcgcggctgagctcatcatcatcaatacgccaagcgacgaaatgggcaccaacgatatta
ttcggagcgggcagtggccgatcgcgtggcaggattatccggatgcgatcgaattccttt
cccaactcacccatatgaacccaacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACTCTGGCTACATTTTCTTTGA 111 465 224 Antisense
CAAGACGGGCTCGGCAGGACATATG 277 183 270 Antisense
GGCAAGAAGTCGACCCTGGATGTTG 160 535 357 Antisense
GAACACAATCCCAAGAGGCCGGTCA 223 351 521 Antisense
TGGCGCCTGAACAAATCCGCAACCA 670 543 581 Antisense
ATATCTTCGCGCTGGGGCTAATCGC 19 21 623 Antisense
TAATCGCGGCTGAGCTCATCATCAT 560 635 641 Antisense
TATTCGGAGCGGGCAGTGGCCGATC 359 663 702 Antisense
CCGATCGCGTGGCAGGATTATCCGG 2 265 721 Antisense
TCCGGATGCGATCGAATTCCTTTCC 154 595 741 Antisense
AACTCACCCATATGAACCCAACAAT 275 139 767 Antisense
Sequence Source Affymetrix Proprietary Database