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[185380_at]

Description F08D12.3 /REP_DB=WormBase Gene ID /WP=CE09236 /TR=P91237 /GB=AAB37924.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 01      4grp_high_8_8 > 41      6grp_highest_nonorm > 41      6grp_total > 09      4grp_total > 54      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 674
1 2 3 4 range
A 752.1
(3)
P 		399.2
(-0.9)
P 		371.6
(-1.2)
P 		207.4
(-3)
P 		545
B 668.2
(3)
P 		412.1
(0.4)
P 		379.3
(0.1)
P 		77.9
(-3)
A 		590
C 664.8
(3)
P 		399.5
(0.2)
P 		258.3
(-1.3)
P 		92
(-3)
P 		573
avr 695
(3) 		403.6
(-0.1) 		336.4
(-0.8) 		125.8
(-3) 		569

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 538
1 2 3 4 5 6 range
A 914.7
(3)
P 		603.6
(-3)
P 		880.2
(2.3)
P 		737.7
(-0.4)
P 		773.5
(0.3)
P 		749.9
(-0.2)
P 		311
B 837
(3)
P 		693.2
(0.5)
P 		757.8
(1.6)
P 		701
(0.6)
P 		679.4
(0.3)
P 		490.9
(-3)
P 		346
C 925.7
(3)
P 		634.7
(-0.2)
P 		852.9
(2.2)
P 		641.6
(-0.2)
P 		766.4
(1.2)
P 		388
(-3)
P 		538
avr 892.5
(3) 		643.8
(-1.3) 		830.3
(1.9) 		693.4
(-0.4) 		739.8
(0.4) 		542.9
(-3) 		350
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 258
1 2 3 4 range
A 273.8
(3)
P 		86.7
(-1.6)
P 		97.1
(-1.4)
P 		30.4
(-3)
P 		243
B 213.1
(3)
P 		101.8
(-0.4)
P 		87.9
(-0.8)
P 		16.6
(-3)
A 		197
C 220.1
(3)
P 		114.9
(-0.1)
P 		90
(-0.8)
P 		15.5
(-3)
P 		205
avr 235.7
(3) 		101.1
(-0.8) 		91.7
(-1) 		20.8
(-3) 		215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 168.6
(-3)
P 		214.7
(1.3)
P 		191.7
(-0.9)
P 		187.1
(-1.3)
P 		233.4
(3)
P 		182.6
(-1.7)
P 		65
B 291.2
(3)
P 		230.7
(-0.4)
P 		184
(-3)
P 		185.7
(-2.9)
P 		276
(2.2)
P 		183.1
(-3)
P 		108
C 343.1
(3)
P 		193.7
(-1.2)
P 		217.1
(-0.5)
P 		129
(-3)
P 		248
(0.3)
P 		129.9
(-3)
P 		214
avr 267.6
(3) 		213
(-0.2) 		197.6
(-1.1) 		167.3
(-2.9) 		252.5
(2.1) 		165.2
(-3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185380_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4042
Sequence Type Exemplar sequence
Representative Public ID F08D12.3 NCBI
Target Description F08D12.3 /REP_DB=WormBase Gene ID /WP=CE09236 /TR=P91237 /GB=AAB37924.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061960(11), NM_061962(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061960 NCBI Caenorhabditis elegans F08D12.3b (F08D12.3) mRNA, complete cds. 11/11 None
NM_061962 NCBI Caenorhabditis elegans F08D12.3a (F08D12.3) mRNA, complete cds. 11/11 A 
SNAP00000023719 ENSEMBL cdna:SNAP chromosome:CEL140:II:2779555:2780792:1 11/11 None
GENEFINDER00000023726 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2779555:2780792:1 11/11 None
F08D12.3b ENSEMBL cdna:known chromosome:CEL140:II:2776402:2780648:1 gene:F08D12.3 11/11 None
F08D12.3a ENSEMBL cdna:known chromosome:CEL140:II:2779544:2780827:1 gene:F08D12.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2779553-2780791(+) 100.0 100.0
Public Domain and Genome References
Ensembl F08D12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37928 Hypothetical protein F08D12.3b [Caenorhabditis elegans] ref|NP_494361.2| F08D12.3b [Caenorhabditis elegans] 1.0E-171
blast AAB37924 Hypothetical protein F08D12.3a [Caenorhabditis elegans] ref|NP_494363.1| F08D12.3a [Caenorhabditis elegans] 1.0E-168
blast AAB37924 Hypothetical protein F08D12.3a [Caenorhabditis elegans] ref|NP_494363.1| F08D12.3a [Caenorhabditis elegans] 1.0E-165
blast AAB37928 Hypothetical protein F08D12.3b [Caenorhabditis elegans] ref|NP_494361.2| F08D12.3b [Caenorhabditis elegans] 1.0E-144
blast AAB37924 Hypothetical protein F08D12.3a [Caenorhabditis elegans] ref|NP_494363.1| F08D12.3a [Caenorhabditis elegans] 1.0E-137
blast AAB37928 Hypothetical protein F08D12.3b [Caenorhabditis elegans] ref|NP_494361.2| F08D12.3b [Caenorhabditis elegans] 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR007026 EMBL-EBI CC domain 4.9E-18
Pfam IPR007026 EMBL-EBI CC domain 1.5E-17
Pfam IPR007026 EMBL-EBI CC domain 0.0081
Pfam IPR007026 EMBL-EBI CC domain 1.1E-17
Pfam IPR007026 EMBL-EBI CC domain 9.9E-16
Pfam IPR007026 EMBL-EBI CC domain 4.9E-18
Pfam IPR007026 EMBL-EBI CC domain 1.5E-17
Pfam IPR007026 EMBL-EBI CC domain 0.0081
Pfam IPR007026 EMBL-EBI CC domain 1.1E-17
Pfam IPR007026 EMBL-EBI CC domain 1.2E-15
Pfam IPR007026 EMBL-EBI CC domain 5.9E-4
Pfam IPR007026 EMBL-EBI CC domain 5.5E-4
Sequence
Target Sequence 
>C. ELEGANS:185380_AT
ttgttgcgaagctcaggatgtatacgattcatccaccgcgacttgtcaggaaggtaaatc
tgtcgggccggcgggcgctggaggatcctgtcctcaaggggcctctattaccaagggaag
tgtctgctgctggaacgaagggattcaagacgcccccgcttccgcctgcaagtcctctgc
tagtccagcaattcttggaatctgcccatccggacaagtactcatcggaaattattgttg
tgaagctaaagatgtgtacgacccatccaccgctacttgtcagaggggttacgaagctgg
accgtatggcaccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTTGCGAAGCTCAGGATGTATAC 709 673 264 Antisense
GATGTATACGATTCATCCACCGCGA 25 411 280 Antisense
ATCCACCGCGACTTGTCAGGAAGGT 656 39 294 Antisense
CAGGAAGGTAAATCTGTCGGGCCGG 208 151 310 Antisense
CGCTGGAGGATCCTGTCCTCAAGGG 62 255 339 Antisense
TCCTCAAGGGGCCTCTATTACCAAG 324 591 354 Antisense
TCCTCTGCTAGTCCAGCAATTCTTG 105 593 436 Antisense
AGCAATTCTTGGAATCTGCCCATCC 68 77 450 Antisense
TAAAGATGTGTACGACCCATCCACC 257 641 510 Antisense
ATCCACCGCTACTTGTCAGAGGGGT 657 39 528 Antisense
ACGAAGCTGGACCGTATGGCACCGG 302 91 554 Antisense
Sequence Source Affymetrix Proprietary Database