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[185379_at]

Description Y47H9C.14 /REP_DB=WormBase Gene ID /WP=CE25306 /TR=Q9NAG9 /GB=CAB76744.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 118.7
(-0.2)
A 		122.5
(0.1)
A 		77.3
(-3)
A 		164.8
(3)
A 		88
B 122.8
(3)
A 		82.3
(0.7)
A 		18.8
(-3)
A 		99.9
(1.7)
A 		104
C 168.9
(-0.3)
A 		190.2
(1)
A 		122.5
(-3)
A 		224.6
(3)
A 		102
avr 136.8
(1.3) 		131.7
(0.9) 		72.9
(-3) 		163.1
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 33.1
(-1.6)
A 		94.1
(3)
A 		83.9
(2.2)
A 		45.9
(-0.6)
A 		94.3
(3)
M 		14.1
(-3)
A 		80
B 69.7
(0.3)
A 		114.4
(3)
A 		31.1
(-2.1)
A 		15.6
(-3)
A 		93.9
(1.8)
A 		102.3
(2.3)
A 		99
C 107.2
(1)
A 		101.6
(0.8)
A 		30.4
(-3)
A 		144.3
(3)
A 		91.3
(0.2)
A 		74.8
(-0.7)
A 		114
avr 70
(-0.7) 		103.4
(3) 		48.5
(-3) 		68.6
(-0.8) 		93.2
(1.9) 		63.7
(-1.3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 43.2
(3)
A 		26.6
(-1.3)
A 		20.2
(-3)
A 		24.1
(-2)
A 		23
B 39.2
(3)
A 		20.3
(-0.3)
A 		4.4
(-3)
A 		21.3
(-0.1)
A 		35
C 55.9
(3)
A 		54.7
(2.6)
A 		42.7
(-1.4)
A 		37.9
(-3)
A 		18
avr 46.1
(3) 		33.9
(-0.1) 		22.4
(-3) 		27.8
(-1.6) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 6.1
(-2.5)
A 		33.5
(3)
A 		18.3
(-0)
A 		11.6
(-1.4)
A 		28.5
(2)
M 		3.4
(-3)
A 		30
B 24.2
(0.5)
A 		38.1
(3)
A 		7.6
(-2.4)
A 		4.1
(-3)
A 		38.1
(3)
A 		38.1
(3)
A 		34
C 39.7
(3)
A 		31
(1.4)
A 		7.7
(-3)
A 		29
(1)
A 		29.6
(1.1)
A 		25
(0.2)
A 		32
avr 23.3
(0.2) 		34.2
(3) 		11.2
(-3) 		14.9
(-2) 		32.1
(2.5) 		22.2
(-0.1) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185379_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1728
Sequence Type Exemplar sequence
Representative Public ID Y47H9C.14 NCBI
Target Description Y47H9C.14 /REP_DB=WormBase Gene ID /WP=CE25306 /TR=Q9NAG9 /GB=CAB76744.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060616(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060616 NCBI Caenorhabditis elegans Y47H9C.14 (Y47H9C.14) mRNA, complete cds. 11/11 None
Y47H9C.14 ENSEMBL cdna:known chromosome:CEL140:I:11905673:11906686:1 gene:Y47H9C.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036888 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11905603-11906617(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47H9C.14
Entrez Gene 190005 Entrez gene
SwissProt Q9NAG9 EMBL-EBI
WormBase CE25306 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB76744 Hypothetical protein Y47H9C.14 [Caenorhabditis elegans] ref|NP_493017.1| Y47H9C.14 [Caenorhabditis elegans] 4.0E-47
blast CAB05115 Hypothetical protein B0513.3 [Caenorhabditis elegans] ref|NP_502671.1| Ribosomal Protein, Large subunit family member (rpl-29) [Caenorhabditis elegans] 2.0E-19
blast CAE74611 Hypothetical protein CBG22400 [Caenorhabditis briggsae] 2.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR002673 EMBL-EBI Ribosomal L29e protein 2.4E-15
Sequence
Target Sequence 
>C. ELEGANS:185379_AT
atgaaaacgataatgccacacaatgcatggaagcccgagaatcacaccaatcacaaccgg
aacaacaaggctcaccgtaatgggatcacgaagccgaagaagcacatcttcctctccata
gaaggaagtcgacgccaattcatcaagagcctccgtttcttcagaaagaacaacaaacgt
cagatcaacaagcccgtcgagtcactacgtaagtttcgaaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAAAACGATAATGCCACACAATG 64 45 22 Antisense
TGCCACACAATGCATGGAAGCCCGA 524 585 35 Antisense
TGCATGGAAGCCCGAGAATCACACC 173 579 45 Antisense
TGGAAGCCCGAGAATCACACCAATC 339 547 49 Antisense
CACCGTAATGGGATCACGAAGCCGA 138 201 94 Antisense
CGTAATGGGATCACGAAGCCGAAGA 314 245 97 Antisense
AATTCATCAAGAGCCTCCGTTTCTT 517 175 158 Antisense
GAGCCTCCGTTTCTTCAGAAAGAAC 251 255 168 Antisense
AAGCCCGTCGAGTCACTACGTAAGT 13 149 211 Antisense
GCCCGTCGAGTCACTACGTAAGTTT 359 279 213 Antisense
GAGTCACTACGTAAGTTTCGAAACA 178 399 220 Antisense
Sequence Source Affymetrix Proprietary Database