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[185378_at]

Description Y57A10B.7 /REP_DB=WormBase Gene ID /WP=CE20328 /TR=Q9XWH4 /GB=CAA21694.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 31      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 57
(3)
A 		5.7
(-3)
A 		12.1
(-2.3)
A 		17.9
(-1.6)
A 		51
B 26.8
(3)
A 		5.8
(-2.3)
A 		2.9
(-3)
A 		17.5
(0.7)
A 		24
C 32.1
(3)
A 		5.6
(-3)
A 		19.2
(0.1)
A 		31
(2.8)
A 		27
avr 38.6
(3) 		5.7
(-3) 		11.4
(-2) 		22.1
(-0) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 24.7
(0.3)
A 		4.5
(-3)
A 		41
(3)
A 		7.4
(-2.5)
A 		38.5
(2.6)
A 		36.1
(2.2)
A 		37
B 25.3
(0.3)
A 		20.7
(-0.4)
A 		1.9
(-3)
A 		19.1
(-0.6)
A 		45.1
(3)
A 		37.1
(1.9)
A 		43
C 18.8
(0.3)
A 		1.9
(-3)
A 		7.3
(-1.9)
A 		2.5
(-2.9)
A 		32.4
(3)
A 		17.2
(0)
A 		31
avr 22.9
(-0.2) 		9
(-3) 		16.7
(-1.4) 		9.7
(-2.9) 		38.7
(3) 		30.1
(1.3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.8
(3)
A 		1.2
(-3)
A 		3.2
(-2.4)
A 		2.6
(-2.6)
A 		20
B 8.5
(3)
A 		1.4
(-2.5)
A 		0.7
(-3)
A 		3.7
(-0.7)
A 		8
C 10.6
(3)
A 		1.6
(-3)
A 		6.7
(0.4)
A 		5.2
(-0.6)
A 		9
avr 13.3
(3) 		1.4
(-3) 		3.5
(-1.9) 		3.8
(-1.8) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 4.6
(-1.2)
A 		1.6
(-3)
A 		8.9
(1.4)
A 		1.9
(-2.8)
A 		11.6
(3)
A 		8.8
(1.3)
A 		10
B 8.8
(-0.2)
A 		6.9
(-0.8)
A 		0.5
(-3)
A 		5.1
(-1.4)
A 		18.3
(3)
A 		13.9
(1.5)
A 		18
C 7
(0.9)
A 		0.6
(-2.9)
A 		1.8
(-2.2)
A 		0.5
(-3)
A 		10.5
(3)
A 		5.8
(0.2)
A 		10
avr 6.8
(-0.7) 		3
(-2.7) 		3.7
(-2.3) 		2.5
(-3) 		13.5
(3) 		9.5
(0.8) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185378_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3415
Sequence Type Exemplar sequence
Representative Public ID Y57A10B.7 NCBI
Target Description Y57A10B.7 /REP_DB=WormBase Gene ID /WP=CE20328 /TR=Q9XWH4 /GB=CAA21694.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064229(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064229 NCBI Caenorhabditis elegans Y57A10B.7 (Y57A10B.7) mRNA, complete cds. 11/11 None
SNAP00000034316 ENSEMBL cdna:SNAP chromosome:CEL140:II:12389990:12393646:-1 11/11 None
GENEFINDER00000034323 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12392655:12393646:-1 11/11 None
Y57A10B.7 ENSEMBL cdna:known chromosome:CEL140:II:12392655:12393646:-1 gene:Y57A10B.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12392651-12393643(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10B.7
Entrez Gene 190346 Entrez gene
SwissProt Q9XWH4 EMBL-EBI
WormBase CE35689 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21694 Hypothetical protein Y57A10B.7 [Caenorhabditis elegans] ref|NP_496630.2| Y57A10B.7 [Caenorhabditis elegans] 1.0E-149
blast CAA21694 Hypothetical protein Y57A10B.7 [Caenorhabditis elegans] ref|NP_496630.2| Y57A10B.7 [Caenorhabditis elegans] 1.0E-142
blast CAA21694 Hypothetical protein Y57A10B.7 [Caenorhabditis elegans] ref|NP_496630.2| Y57A10B.7 [Caenorhabditis elegans] 1.0E-125
blast CAE73513 Hypothetical protein CBG20975 [Caenorhabditis briggsae] 9.0E-86
blast CAE73513 Hypothetical protein CBG20975 [Caenorhabditis briggsae] 2.0E-80
blast CAE73513 Hypothetical protein CBG20975 [Caenorhabditis briggsae] 5.0E-65
Sequence
Target Sequence 
>C. ELEGANS:185378_AT
gctcaatccaaatcctacgaatccgacacttcatcggccgaatcgttgcgtcaaaaacga
acagctccctccgcgattcgtaccgtgcaaattcaaaaagaaatcgttcttccttacgat
ggaaatctagtctccgtctatgagaagtcgagcaacacccgctctttggacacgatttca
gagccaggcgatcttgaggagttcaagaagaaggctgaggaatccaagtacgttggtcct
cagattgtcccaatgaaattcgtgacaactgacgtggagacgccggttaaggcgattttt
gtttcggatttcgacttctgccaggcaatgcatcacccgccacaaagctcgacccaaagc
aagaaagtggaattttccaagcggttcgaggaaaacgatagtccacgtgcaaaaatcagc
ctggtccggaaaattcacgcggaaaaagtcgatgacaatctcaacaatcaagccgggctt
gttggcttcatcctgcctgatttggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAATCCAAATCCTACGAATCCG 19 303 121 Antisense
TACGAATCCGACACTTCATCGGCCG 572 647 136 Antisense
TCATCGGCCGAATCGTTGCGTCAAA 443 617 151 Antisense
TGAGAAGTCGAGCAACACCCGCTCT 391 569 261 Antisense
GAGCCAGGCGATCTTGAGGAGTTCA 295 385 301 Antisense
AAGTACGTTGGTCCTCAGATTGTCC 171 157 346 Antisense
GACAACTGACGTGGAGACGCCGGTT 698 365 384 Antisense
GATTTCGACTTCTGCCAGGCAATGC 516 427 427 Antisense
CAGCCTGGTCCGGAAAATTCACGCG 383 201 537 Antisense
TCAAGCCGGGCTTGTTGGCTTCATC 93 631 588 Antisense
GGCTTCATCCTGCCTGATTTGGAAA 578 537 604 Antisense
Sequence Source Affymetrix Proprietary Database