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[185377_at]

Description Y37A1B.2B /REP_DB=WormBase Gene ID /WP=CE19072 /TR=Q9XXG2 /GB=CAA19487.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 07      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 34.3
(3)
A 		29
(1.8)
A 		21.1
(-0)
A 		8.1
(-3)
A 		26
B 13.9
(-0.3)
A 		4.6
(-3)
A 		25.4
(3)
A 		7.7
(-2.1)
A 		21
C 9.8
(-3)
A 		12.5
(-2.6)
A 		13.3
(-2.5)
A 		48.1
(3)
A 		38
avr 19.3
(1) 		15.4
(-3) 		19.9
(1.6) 		21.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 6.8
(-3)
A 		14.5
(-1.2)
A 		7
(-3)
A 		32
(3)
A 		11.5
(-1.9)
A 		10.4
(-2.1)
A 		25
B 13.4
(3)
A 		5.3
(-2.7)
A 		8.5
(-0.5)
A 		4.9
(-3)
A 		11.1
(1.4)
A 		12
(2)
A 		9
C 35
(1.5)
A 		19.6
(-1)
A 		9.7
(-2.5)
A 		44.9
(3)
A 		36.4
(1.7)
A 		6.5
(-3)
A 		38
avr 18.4
(0.2) 		13.1
(-1.5) 		8.4
(-3) 		27.3
(3) 		19.7
(0.6) 		9.6
(-2.6) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.5
(3)
A 		6.3
(-0.3)
A 		5.5
(-0.7)
A 		1.2
(-3)
A 		11
B 4.4
(1.1)
A 		1.1
(-3)
A 		5.9
(3)
A 		1.6
(-2.4)
A 		5
C 3.2
(-3)
A 		3.6
(-2.5)
A 		4.7
(-1.2)
A 		8.1
(3)
A 		5
avr 6.7
(3) 		3.7
(-2.8) 		5.4
(0.5) 		3.6
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.3
(-3)
A 		5.2
(0.4)
A 		1.5
(-2.8)
A 		8.1
(3)
A 		3.5
(-1.1)
A 		2.5
(-1.9)
A 		7
B 4.7
(3)
A 		1.8
(-2.1)
A 		2.1
(-1.6)
A 		1.3
(-3)
A 		4.5
(2.6)
A 		4.5
(2.6)
A 		3
C 13
(3)
A 		6
(-0.9)
A 		2.5
(-2.8)
A 		9
(0.8)
A 		11.8
(2.3)
A 		2.2
(-3)
A 		11
avr 6.3
(2.6) 		4.3
(0) 		2
(-3) 		6.1
(2.3) 		6.6
(3) 		3.1
(-1.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185377_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10044
Sequence Type Exemplar sequence
Representative Public ID Y37A1B.2B NCBI
Target Description Y37A1B.2B /REP_DB=WormBase Gene ID /WP=CE19072 /TR=Q9XXG2 /GB=CAA19487.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070294(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070294 NCBI Caenorhabditis elegans Lateral Signaling Target family member (lst-4) (lst-4) mRNA, complete cds. 11/11 A 
SNAP00000004227 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14061338:14068439:-1 11/11 None
Y37A1B.2b ENSEMBL cdna:known chromosome:CEL140:IV:14061001:14068513:-1 gene:Y37A1B.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178361 4 1 NM_070292 193871_s_at (11)
NM_070294 173958_at (11), 185377_at (11), 193871_s_at (11)
NM_182290 193871_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14066707-14068445(-) 95.11 100.0
Public Domain and Genome References
Ensembl Y37A1B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19487 Hypothetical protein Y37A1B.2b [Caenorhabditis elegans] ref|NP_502695.2| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 0.0
blast CAD56253 Hypothetical protein Y37A1B.2c [Caenorhabditis elegans] ref|NP_502693.2| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 0.0
blast CAD56254 Hypothetical protein Y37A1B.2d [Caenorhabditis elegans] ref|NP_872090.1| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001683 EMBL-EBI Phox-like 5.2E-29
Pfam IPR001683 EMBL-EBI Phox-like 8.2E-29
Sequence
Target Sequence 
>C. ELEGANS:185377_AT
gctcttcacatcgagtcttcgaaaggccgttgagaactacccaacaccaccgggcggctc
atctgaagatgctcatcggcagcttctcgaacgtcgtcgcaaacagatgcttcgacgaca
cacgtgtagtacactcatcaaacaagacacatctgcttcaccgcataagatgaagccacc
tattctgatggaggaagaggatgaacagcattccactgggaagcactcgtctagaaagag
cagttttaagaaaagtggagcaatatcgaagagtgtcctaccaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTTCACATCGAGTCTTCGAAAG 98 301 15 Antisense
GGCCGTTGAGAACTACCCAACACCA 409 535 39 Antisense
CCGGGCGGCTCATCTGAAGATGCTC 287 265 64 Antisense
TGAAGATGCTCATCGGCAGCTTCTC 466 575 78 Antisense
CTTCTCGAACGTCGTCGCAAACAGA 214 221 97 Antisense
ACAGATGCTTCGACGACACACGTGT 145 107 117 Antisense
CAAACAAGACACATCTGCTTCACCG 344 191 153 Antisense
GATGAAGCCACCTATTCTGATGGAG 408 411 183 Antisense
GAGGATGAACAGCATTCCACTGGGA 559 403 211 Antisense
CCACTGGGAAGCACTCGTCTAGAAA 218 271 227 Antisense
ATATCGAAGAGTGTCCTACCACCAC 275 19 277 Antisense
Sequence Source Affymetrix Proprietary Database