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[185376_s_at]

Description M01B12.4 /REP_DB=WormBase Gene ID /WP=CE18062 /TR=O61862 /GB=AAC17562.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 29      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 60      6grp_total > 38      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 537.4
(3)
P 		318.5
(-2.4)
P 		294.4
(-3)
P 		323.1
(-2.3)
P 		243
B 564.1
(3)
P 		339.4
(-2.5)
P 		320.1
(-3)
P 		377.2
(-1.6)
P 		244
C 469.7
(3)
P 		367.6
(-3)
P 		384.7
(-2)
P 		422.8
(0.2)
P 		102
avr 523.7
(3) 		341.8
(-2.7) 		333.1
(-3) 		374.4
(-1.7) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 602.6
(2.8)
P 		491.9
(1)
P 		246.6
(-3)
P 		300.4
(-2.1)
P 		431
(0)
P 		614.1
(3)
P 		368
B 481
(3)
P 		468.1
(2.7)
P 		241.6
(-3)
P 		303.7
(-1.4)
P 		357.3
(-0.1)
P 		393.3
(0.8)
P 		239
C 581.5
(3)
P 		418.5
(0.1)
P 		347.3
(-1.2)
P 		249.4
(-3)
P 		413.3
(-0)
P 		278.9
(-2.5)
P 		332
avr 555
(3) 		459.5
(0.9) 		278.5
(-3) 		284.5
(-2.9) 		400.5
(-0.4) 		428.8
(0.3) 		277
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 195.7
(3)
P 		69.1
(-2.1)
P 		77
(-1.8)
P 		47.3
(-3)
P 		148
B 179.9
(3)
P 		83.8
(-2.5)
P 		74.2
(-3)
P 		80.4
(-2.6)
P 		106
C 155.5
(3)
P 		105.7
(-0.5)
P 		134.1
(1.5)
P 		71.3
(-3)
P 		84
avr 177
(3) 		86.2
(-1.9) 		95.1
(-1.4) 		66.3
(-3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 111.1
(-0.2)
P 		175
(3)
P 		53.7
(-3)
P 		76.2
(-1.9)
P 		130.1
(0.8)
P 		149.5
(1.7)
P 		121
B 167.4
(3)
P 		155.8
(2.4)
P 		58.7
(-3)
P 		80.4
(-1.8)
P 		145.2
(1.8)
P 		146.7
(1.9)
P 		109
C 215.5
(3)
P 		127.7
(-0.2)
P 		88.4
(-1.6)
P 		50.2
(-3)
P 		133.8
(0)
P 		93.4
(-1.4)
P 		165
avr 164.7
(3) 		152.8
(2.3) 		66.9
(-3) 		68.9
(-2.9) 		136.4
(1.3) 		129.9
(0.9) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185376_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.139
Sequence Type Exemplar sequence
Representative Public ID M01B12.4 NCBI
Target Description M01B12.4 /REP_DB=WormBase Gene ID /WP=CE18062 /TR=O61862 /GB=AAC17562.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170839(10), NM_170840(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170839 NCBI Caenorhabditis elegans M01B12.4a (M01B12.4) mRNA, complete cds. 10/11 None
NM_170840 NCBI Caenorhabditis elegans M01B12.4c (M01B12.4) mRNA, complete cds. 10/11 None
M01B12.4a.2 ENSEMBL cdna:known chromosome:CEL140:I:3070985:3084875:-1 gene:M01B12.4 10/11 None
M01B12.4a.1 ENSEMBL cdna:known chromosome:CEL140:I:3070985:3084877:-1 gene:M01B12.4 10/11 None
M01B12.4c ENSEMBL cdna:known chromosome:CEL140:I:3070996:3084838:-1 gene:M01B12.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171834 2/11 Cross Hyb Matching Probes None
SNAP00000040603 4/11 Cross Hyb Matching Probes None
GENEFINDER00000040607 2/11 Cross Hyb Matching Probes None
M01B12.4b 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3565638 3 2 NM_170839 185376_s_at (10)
NM_170840 185376_s_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3071241-3084066(-) 99.4 99.4
Public Domain and Genome References
Ensembl M01B12.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17562 Hypothetical protein M01B12.4a [Caenorhabditis elegans] ref|NP_740823.1| M01B12.4a [Caenorhabditis elegans] 0.0
blast AAM15592 Hypothetical protein M01B12.4b [Caenorhabditis elegans] ref|NP_740824.1| M01B12.4b [Caenorhabditis elegans] 0.0
blast AAM81100 Hypothetical protein M01B12.4c [Caenorhabditis elegans] ref|NP_740825.2| M01B12.4c [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185376_S_AT
gagttcttccgattgttcgatcagctgaagatattgcgagaaaggagaaggagattcggg
agagcgaggaacgcaaatcccggctcgccgcgattcttgcaaagtcgagaggaatggcgt
cgccgatgacgaacacgttgccaccgacggctgatgatattaagggtagacatctgaatc
gacgggcggtgaaatctactaaaaatccatcacagttcatcatcatcatcaactctccag
ttttcattcattgcttacgggtttctcttcattacgatcttgccccatccaaaagtgcat
ttcgacagtttttgttccagtctcaattcagccgccttcatgtcaactcgctttattctc
cattgaaatcctcttcctcacccacctcctgtacactattctgtactctctctctctctt
tccatttccccaattatcttgaatatgctcgtattatatcgcatccatgtaaaatagata
actattgctcatcatcttttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTCTTCCGATTGTTCGATCAGC 59 399 1613 Antisense
CTCGCCGCGATTCTTGCAAAGTCGA 609 233 1696 Antisense
GTAGACATCTGAATCGACGGGCGGT 465 445 1778 Antisense
AATCCATCACAGTTCATCATCATCA 584 167 1816 Antisense
AACTCTCCAGTTTTCATTCATTGCT 395 141 1843 Antisense
TGCTTACGGGTTTCTCTTCATTACG 650 561 1864 Antisense
TTTTGTTCCAGTCTCAATTCAGCCG 500 677 1922 Antisense
CTTCATGTCAACTCGCTTTATTCTC 176 221 1948 Antisense
GTACACTATTCTGTACTCTCTCTCT 392 461 2003 Antisense
GCTCGTATTATATCGCATCCATGTA 607 299 2059 Antisense
TAACTATTGCTCATCATCTTTTCCC 449 639 2091 Antisense
Sequence Source Affymetrix Proprietary Database