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[185375_at]

Description D1007.11 /REP_DB=WormBase Gene ID /WP=CE09046 /TR=O01867 /GB=AAK18917.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 90      4grp_highest_8_8 > 56      4grp_high_8_8 > 27      6grp_highest_nonorm > 90      6grp_total > 91      4grp_total > 36      6grp_highest_sub > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 119.4
(-1.4)
P 		174.7
(3)
P 		100
(-3)
P 		132.1
(-0.4)
P 		75
B 148.5
(3)
P 		145.7
(2.6)
P 		105.4
(-3)
P 		145.4
(2.6)
P 		43
C 173.1
(3)
P 		139.4
(-0.3)
P 		115.1
(-2.7)
P 		111.8
(-3)
P 		61
avr 147
(2.2) 		153.3
(3) 		106.8
(-3) 		129.8
(-0) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 135
(2.9)
P 		135.4
(3)
P 		121.1
(-1.2)
P 		131.1
(1.7)
P 		119
(-1.8)
P 		115.1
(-3)
P 		20
B 89.7
(-3)
P 		122.9
(2.9)
P 		110.1
(0.6)
P 		118.6
(2.1)
P 		121.6
(2.6)
P 		123.7
(3)
P 		34
C 140.3
(-1.8)
P 		141.5
(-1.6)
P 		133.9
(-3)
P 		166.9
(3)
P 		164.4
(2.5)
P 		145.5
(-0.9)
P 		33
avr 121.7
(-3) 		133.3
(1) 		121.7
(-3) 		138.9
(3) 		135
(1.6) 		128.1
(-0.8) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 43.5
(3)
P 		37.9
(1.6)
P 		26.2
(-1.3)
P 		19.3
(-3)
P 		24
B 47.4
(3)
P 		36
(0)
P 		24.4
(-3)
P 		31
(-1.3)
P 		23
C 57.3
(3)
P 		40.1
(0.3)
P 		40.1
(0.3)
P 		18.9
(-3)
P 		38
avr 49.4
(3) 		38
(0.4) 		30.2
(-1.4) 		23.1
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 24.9
(-3)
P 		48.2
(3)
P 		26.4
(-2.6)
P 		33.3
(-0.8)
P 		35.9
(-0.2)
P 		28
(-2.2)
P 		23
B 31.2
(-1.8)
P 		40.9
(0.8)
P 		26.7
(-3)
P 		31.4
(-1.8)
P 		49.4
(3)
P 		46.1
(2.1)
P 		23
C 52
(2.6)
P 		43.2
(-0.1)
P 		34.1
(-2.8)
P 		33.6
(-3)
P 		53.2
(3)
P 		48.7
(1.6)
P 		20
avr 36
(-0.6) 		44.1
(2.3) 		29.1
(-3) 		32.8
(-1.7) 		46.2
(3) 		40.9
(1.1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185375_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2106
Sequence Type Exemplar sequence
Representative Public ID D1007.11 NCBI
Target Description D1007.11 /REP_DB=WormBase Gene ID /WP=CE09046 /TR=O01867 /GB=AAK18917.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025898(11), NM_001025897(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025898 NCBI Caenorhabditis elegans D1007.10c (D1007.10) mRNA, complete cds. 11/11 None
NM_001025897 NCBI Caenorhabditis elegans D1007.10b (D1007.10) mRNA, complete cds. 11/11 None
SNAP00000011283 ENSEMBL cdna:SNAP chromosome:CEL140:I:4586275:4589357:1 11/11 None
D1007.10b ENSEMBL cdna:known chromosome:CEL140:I:4586274:4589357:1 gene:D1007.10 11/11 A 
D1007.10c ENSEMBL cdna:known chromosome:CEL140:I:4586275:4589386:1 gene:D1007.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
183889 3 2 NM_001025897 185375_at (11)
NM_001025898 185375_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4586274-4586933(+) 91.79 100.0
Public Domain and Genome References
Ensembl D1007.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT68900 Hypothetical protein D1007.10b [Caenorhabditis elegans] ref|NP_001021068.1| D1007.10b [Caenorhabditis elegans] 0.0
blast AAK18916 Hypothetical protein D1007.10a [Caenorhabditis elegans] ref|NP_001021067.1| D1007.10a [Caenorhabditis elegans] pir||T30928 hypothetical protein D1007.10 - Caenorhabditis elegans 1.0E-110
blast T30927 hypothetical protein D1007.11 - Caenorhabditis elegans 2.0E-96
blast AAT68900 Hypothetical protein D1007.10b [Caenorhabditis elegans] ref|NP_001021068.1| D1007.10b [Caenorhabditis elegans] 1.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021068.1 5 108-127,202-224,245-267,272-291,344-366
D1007.10b 5 108-127,202-224,245-267,272-291,344-366
SNAP00000011283 5 108-127,202-224,245-267,272-291,344-366
Sequence
Target Sequence 
>C. ELEGANS:185375_AT
atgaggactcttcgaatagcccagtacagtgttcttactgttgggttcgccatttatatg
taccgactgattgaagaaattccgatagacataaggaatttaaattcggattctctcgag
gggatcatcaactccgatgaactatgtgatgtcaccgtcagcaataggaatcgtgggctt
ttagttcgaaacgactctttagatcttgatattttgaaagcaaaattcactacatttttc
agcaaaagatatctcactcgatttctaagcgaacaagttccttttctgcacgtgatcgat
gaagctcttctcgtgaaacgatttgtgatgtgtgcatgctttatggtattctgtttaaca
gtgatctggtttctggtgattcgaagaatgggaaatctcattaaaagattgtcagtgctg
aatcagctggaagatgcggaatctgttgaatgggcgagatgcatcagagagtttacacaa
gaaaagctcgcagtactgtgcttttgcatagttccaccgtttgcacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGGACTCTTCGAATAGCCCAGT 78 45 13 Antisense
GAATAGCCCAGTACAGTGTTCTTAC 456 325 26 Antisense
TGTTCTTACTGTTGGGTTCGCCATT 542 561 42 Antisense
GGGTTCGCCATTTATATGTACCGAC 201 495 55 Antisense
CTCTCGAGGGGATCATCAACTCCGA 31 231 125 Antisense
ATGTGATGTCACCGTCAGCAATAGG 652 49 156 Antisense
AGATATCTCACTCGATTTCTAAGCG 118 67 259 Antisense
AGCGAACAAGTTCCTTTTCTGCACG 51 83 280 Antisense
GCACGTGATCGATGAAGCTCTTCTC 610 315 300 Antisense
AGCTCGCAGTACTGTGCTTTTGCAT 653 79 497 Antisense
TGCATAGTTCCACCGTTTGCACAGA 529 577 517 Antisense
Sequence Source Affymetrix Proprietary Database