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[185374_at]

Description Y75B8A.21 /REP_DB=WormBase Gene ID /WP=CE23032 /TR=Q9XW66 /GB=CAA22105.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 29.3
(1.1)
A 		24
(0.3)
A 		3.4
(-3)
A 		40.9
(3)
A 		38
B 36.2
(3)
A 		29.7
(-1.6)
A 		34
(1.4)
A 		27.8
(-3)
P 		8
C 38.4
(3)
P 		19
(-0.9)
A 		9
(-2.9)
A 		8.7
(-3)
A 		30
avr 34.6
(3) 		24.2
(-0.3) 		15.5
(-3) 		25.8
(0.2) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 28.2
(0.3)
A 		16.7
(-1.8)
A 		23
(-0.6)
A 		28.9
(0.5)
A 		10.1
(-3)
A 		42.7
(3)
A 		33
B 22.8
(-0.8)
A 		14.6
(-3)
A 		36.7
(3)
A 		28.3
(0.7)
A 		29.5
(1)
A 		20.5
(-1.4)
A 		22
C 35.8
(2.6)
A 		14.8
(-0.8)
A 		11
(-1.5)
A 		33.8
(2.3)
A 		38.3
(3)
M 		1.5
(-3)
A 		37
avr 28.9
(2.4) 		15.4
(-3) 		23.6
(0.3) 		30.3
(3) 		26
(1.3) 		21.6
(-0.5) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 10.7
(3)
A 		5.2
(-0.4)
A 		0.9
(-3)
A 		6
(0.1)
A 		10
B 11.5
(3)
A 		7.3
(-1.5)
A 		7.9
(-0.9)
A 		5.9
(-3)
P 		6
C 12.7
(3)
P 		5.5
(-0.9)
A 		3.2
(-2.1)
A 		1.5
(-3)
A 		11
avr 11.6
(3) 		6
(-1.4) 		4
(-3) 		4.5
(-2.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.2
(-1.2)
A 		6
(-0.6)
A 		5
(-1.4)
A 		7.3
(0.5)
A 		3
(-3)
A 		10.4
(3)
A 		7
B 7.9
(-0.5)
A 		4.9
(-3)
A 		8.9
(0.4)
A 		7.5
(-0.8)
A 		12
(3)
A 		7.7
(-0.6)
A 		7
C 13.3
(3)
A 		4.5
(-1.1)
A 		2.8
(-1.9)
A 		6.8
(-0)
A 		12.4
(2.6)
M 		0.5
(-3)
A 		13
avr 8.8
(2.6) 		5.1
(-3) 		5.6
(-2.3) 		7.2
(0.2) 		9.1
(3) 		6.2
(-1.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185374_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6370
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.21 NCBI
Target Description Y75B8A.21 /REP_DB=WormBase Gene ID /WP=CE23032 /TR=Q9XW66 /GB=CAA22105.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067192(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067192 NCBI Caenorhabditis elegans Y75B8A.21 (Y75B8A.21) mRNA, complete cds. 11/11 None
Y75B8A.21 ENSEMBL cdna:known chromosome:CEL140:III:12236059:12239091:1 gene:Y75B8A.21 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020084 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12236054-12239087(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.21
Entrez Gene 190708 Entrez gene
SwissProt Q9XW66 EMBL-EBI
WormBase CE23032 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22105 Hypothetical protein Y75B8A.21 [Caenorhabditis elegans] ref|NP_499593.1| Y75B8A.21 [Caenorhabditis elegans] 1.0E-145
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 1.0E-21
blast CAB07211 Hypothetical protein F47H4.4 [Caenorhabditis elegans] ref|NP_507388.1| F47H4.4 [Caenorhabditis elegans] 2.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.3E-19
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.0E-10
Sequence
Target Sequence 
>C. ELEGANS:185374_AT
gttggtgatcactgcattgttgcctatgggaatatctcaagaaatatcaatggagtagat
cataagaattttgctttcggtgatttgaatatgattttgaatatgtcaaagctggaatta
aaggagcttcagataataataatttgtgggcttctgggagagcgtgaaagcttcatggat
attttcgaaaatcttgattctattcattctcgaaaatgcactattgaaggatttaattct
ctggaaatatcacgaatactttcatttttcaaagctggggtgcttgaagaaatcgattta
tgttcgttaaattcaatatgcaaaaataaggaaattattgaacttgagcaatggaaaaaa
gcattgaagttggtatccagaagccatgtgattcaggtcgagaatcttttaagcttcaaa
gagtttgaggtctatgagacagccatgactaagaggagagcagttaaaattagagatgtg
agttttgatttacacccaatcaagctcgaagcgctacgacaaataataaaaggaatcgaa
tcttcccatcgagacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGTGATCACTGCATTGTTGCCT 693 435 289 Antisense
GCATTGTTGCCTATGGGAATATCTC 288 307 302 Antisense
AAGAATTTTGCTTTCGGTGATTTGA 430 151 352 Antisense
GTGGGCTTCTGGGAGAGCGTGAAAG 605 487 434 Antisense
AAATCTTGATTCTATTCATTCTCGA 592 117 477 Antisense
TTTCATTTTTCAAAGCTGGGGTGCT 539 669 548 Antisense
GAAGCCATGTGATTCAGGTCGAGAA 580 343 668 Antisense
AGGTCGAGAATCTTTTAAGCTTCAA 223 57 683 Antisense
AGGTCTATGAGACAGCCATGACTAA 152 57 716 Antisense
TTACACCCAATCAAGCTCGAAGCGC 563 681 778 Antisense
GGAATCGAATCTTCCCATCGAGACG 275 533 820 Antisense
Sequence Source Affymetrix Proprietary Database