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[185373_s_at]

Description F23H11.4 /REP_DB=WormBase Gene ID /WP=CE09612 /TR=O01915 /GB=AAC71136.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 47      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 74      6grp_total > 47      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 393
1 2 3 4 range
A 740.4
(3)
P 		375.4
(-3)
P 		405
(-2.5)
P 		500.7
(-0.9)
P 		365
B 767.9
(3)
P 		533.6
(-0.8)
P 		394.1
(-3)
P 		466.2
(-1.8)
P 		374
C 719
(3)
P 		479.4
(-2.2)
P 		444.3
(-3)
P 		549.1
(-0.7)
P 		275
avr 742.4
(3) 		462.8
(-2.1) 		414.5
(-3) 		505.3
(-1.3) 		328

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 783.9
(1.8)
P 		714.4
(0.4)
P 		549.1
(-2.8)
P 		540.2
(-3)
P 		568.5
(-2.4)
P 		844.9
(3)
P 		305
B 822.8
(3)
P 		726.7
(1.5)
P 		626.2
(-0.1)
P 		536.8
(-1.5)
P 		439.8
(-3)
P 		779.2
(2.3)
P 		383
C 748.6
(2.8)
P 		716.6
(2.2)
P 		594.3
(-0.3)
P 		598.2
(-0.2)
P 		459.3
(-3)
P 		759
(3)
P 		300
avr 785.1
(2.8) 		719.2
(1.5) 		589.9
(-1) 		558.4
(-1.6) 		489.2
(-3) 		794.4
(3) 		305
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 269.6
(3)
P 		81.5
(-2.7)
P 		105.9
(-2)
P 		73.3
(-3)
P 		196
B 244.9
(3)
P 		131.8
(-1.4)
P 		91.3
(-3)
P 		99.3
(-2.7)
P 		154
C 238
(3)
P 		137.8
(-1.1)
P 		154.8
(-0.4)
P 		92.6
(-3)
P 		145
avr 250.8
(3) 		117
(-1.9) 		117.3
(-1.9) 		88.4
(-3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 144.5
(-1.9)
P 		254.1
(3)
P 		119.6
(-3)
P 		137
(-2.2)
P 		171.6
(-0.7)
P 		205.7
(0.8)
P 		135
B 286.3
(2.8)
P 		241.9
(1)
P 		152
(-2.6)
P 		142.2
(-3)
P 		178.7
(-1.5)
P 		290.6
(3)
P 		148
C 277.5
(3)
P 		218.7
(0.8)
P 		151.3
(-1.8)
P 		120.3
(-3)
P 		148.6
(-1.9)
P 		254.1
(2.1)
P 		157
avr 236.1
(2.3) 		238.2
(2.4) 		141
(-2.6) 		133.2
(-3) 		166.3
(-1.3) 		250.1
(3) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185373_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8324
Sequence Type Exemplar sequence
Representative Public ID F23H11.4 NCBI
Target Description F23H11.4 /REP_DB=WormBase Gene ID /WP=CE09612 /TR=O01915 /GB=AAC71136.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064888(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064888 NCBI Caenorhabditis elegans F23H11.4a (F23H11.4) mRNA, complete cds. 11/11 None
SNAP00000010294 ENSEMBL cdna:SNAP chromosome:CEL140:III:902410:908089:-1 11/11 None
GENEFINDER00000010304 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:902410:907516:-1 11/11 None
F23H11.4a ENSEMBL cdna:known chromosome:CEL140:III:902199:907516:-1 gene:F23H11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175253 2 1 NM_064888 185373_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:902409-907516(-) 100.0 100.0
Public Domain and Genome References
Ensembl F23H11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71136 Hypothetical protein F23H11.4a [Caenorhabditis elegans] ref|NP_497289.1| F23H11.4a [Caenorhabditis elegans] 0.0
blast CAE69143 Hypothetical protein CBG15173 [Caenorhabditis briggsae] 0.0
blast AAN63407 Hypothetical protein F23H11.4b [Caenorhabditis elegans] ref|NP_871688.1| F23H11.4b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000198 EMBL-EBI RhoGAP domain 1.8E-46
Pfam IPR000198 EMBL-EBI RhoGAP domain 1.8E-46
Sequence
Target Sequence 
>C. ELEGANS:185373_S_AT
gaaagaaaaccgcccgttcaatgtgaaaatgagcttggcgagtgaggaagtttgtagaga
ggctattgcaaaacgtggattcgacggaccacccgattctccatatgcgatattcgagtg
tctagccggtggaaacctaatcagacgacttccgaatgctcagaaaatgtcaaaatgtgt
acttcaatggattgattggaattgtaaagatgcatatctattgtttgatcatgataaata
tcaattcaacgggactgatatgtcatgttttactgggaaaatcaaaatcgctgagcctgg
gtcacgaacattcaaatcgtatgaagtcaagattgaaaatgggacttcgattgtcgcgtt
ccgaaacgagaaactctggaaagcgtggcctatggatgattcgatttggtatgttggcac
cgagccaacaagaaaatcgccaaacttgttcaacgcaactatgatttgttcgacgaaaac
tggctattccagtagccgatttcctggcttctgcttctcgtttaaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGAAAACCGCCCGTTCAATGTG 189 353 2415 Antisense
ACCCGATTCTCCATATGCGATATTC 189 91 2505 Antisense
GATATTCGAGTGTCTAGCCGGTGGA 241 427 2523 Antisense
GAAACCTAATCAGACGACTTCCGAA 584 349 2546 Antisense
AAAATCGCTGAGCCTGGGTCACGAA 56 133 2698 Antisense
AAATGGGACTTCGATTGTCGCGTTC 73 121 2751 Antisense
GAAACTCTGGAAAGCGTGGCCTATG 321 357 2784 Antisense
GATTTGGTATGTTGGCACCGAGCCA 653 427 2817 Antisense
ATCGCCAAACTTGTTCAACGCAACT 701 35 2850 Antisense
CAGTAGCCGATTTCCTGGCTTCTGC 59 207 2904 Antisense
TGGCTTCTGCTTCTCGTTTAAAGAA 408 543 2919 Antisense
Sequence Source Affymetrix Proprietary Database