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[185372_at]

Description Y57A10A.1 /REP_DB=WormBase Gene ID /WP=CE25499 /TR=Q9U209 /GB=CAB60770.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 26.2
(-0.1)
A 		10.9
(-3)
A 		27
(0.1)
A 		42.1
(3)
A 		31
B 10.8
(-1.3)
A 		25.7
(3)
A 		4.9
(-3)
A 		17.3
(0.6)
A 		21
C 4.2
(-2.9)
A 		9.7
(-2.6)
A 		3.1
(-3)
A 		92.4
(3)
A 		89
avr 13.7
(-2.7) 		15.4
(-2.4) 		11.7
(-3) 		50.6
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 3.1
(-3)
A 		2.9
(-3)
A 		3.5
(-3)
A 		22
(-1.4)
A 		33.2
(-0.5)
A 		74.9
(3)
P 		72
B 2.3
(-3)
A 		18
(-1)
A 		21.4
(-0.6)
A 		33.5
(0.9)
A 		28
(0.2)
A 		50.5
(3)
P 		48
C 12.7
(-2)
A 		13.7
(-1.8)
A 		14
(-1.7)
A 		8.2
(-3)
A 		17.2
(-1)
A 		35.4
(3)
P 		27
avr 6
(-3) 		11.5
(-2.3) 		13
(-2.1) 		21.2
(-1.1) 		26.1
(-0.5) 		53.6
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.5
(3)
A 		2.4
(-3)
A 		7.1
(1)
A 		6.2
(0.2)
A 		7
B 3.4
(-0.3)
A 		6.3
(3)
A 		1.1
(-3)
A 		3.7
(0)
A 		5
C 1.4
(-2.9)
A 		2.8
(-2.3)
A 		1.1
(-3)
A 		15.6
(3)
A 		15
avr 4.8
(-1.1) 		3.8
(-2.2) 		3.1
(-3) 		8.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1
(-2.9)
A 		0.8
(-2.9)
A 		5.6
(-1.3)
A 		10
(0.2)
A 		18.2
(3)
P 		18
B 0.8
(-3)
A 		6
(-1.3)
A 		5.2
(-1.5)
A 		8.9
(-0.3)
A 		11.4
(0.5)
A 		18.8
(3)
P 		18
C 4.7
(-1.2)
A 		4.2
(-1.5)
A 		3.6
(-1.8)
A 		1.6
(-3)
A 		5.6
(-0.6)
A 		11.8
(3)
P 		10
avr 2
(-3) 		3.7
(-2.3) 		3.2
(-2.5) 		5.4
(-1.6) 		9
(-0.1) 		16.3
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185372_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2909
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.1 NCBI
Target Description Y57A10A.1 /REP_DB=WormBase Gene ID /WP=CE25499 /TR=Q9U209 /GB=CAB60770.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064180(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064180 NCBI Caenorhabditis elegans Y57A10A.1 (Y57A10A.1) mRNA, complete cds. 11/11 None
SNAP00000026012 ENSEMBL cdna:SNAP chromosome:CEL140:II:12137949:12147037:1 10/11 None
GENEFINDER00000026054 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12137500:12147179:1 10/11 None
Y57A10A.1 ENSEMBL cdna:known chromosome:CEL140:II:12137607:12147037:1 gene:Y57A10A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12137178-12147034(+) 97.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.1
Entrez Gene 190331 Entrez gene
SwissProt Q9U209 EMBL-EBI
WormBase CE28714 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60770 Hypothetical protein Y57A10A.1 [Caenorhabditis elegans] ref|NP_496581.1| Y57A10A.1 [Caenorhabditis elegans] 0.0
blast T31623 hypothetical protein Y57A10A.a - Caenorhabditis elegans 0.0
blast CAA99796 Hypothetical protein C47E8.8 [Caenorhabditis elegans] emb|CAB57906.1| Hypothetical protein C47E8.8 [Caenorhabditis elegans] ref|NP_506629.1| C47E8.8 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 5.5E-50
Pfam IPR006570 EMBL-EBI SPK 5.5E-50
Pfam IPR006570 EMBL-EBI SPK 5.5E-50
Sequence
Target Sequence 
>C. ELEGANS:185372_AT
gttcctgtatcctctggaattccggctccttctgtgaaaattgagccaatgagcttgacc
ttttccaatgacaacgtggcatacacgcaggcggagtacggttttgtggaacaatttgaa
aacataaaaaaaaaggcctcatcttcgtctaattaccttccaataccatatccacaacca
acaggaactattggcctacacgaattttttgaacttttgcgtcatattcttattctgttg
gaacgtgaagagctctcggagctcacgaaacaaatcaagacaatcatcgaaaatggaagc
gatgaaaaaattccaacgaatcgaatcaattcggtgctcgacgtggcattctacaaaatt
cagcgaaaattcgtcgtgacatcatcatcatcatcatcgttgcccaattcgacgagcgct
cgaggattcttgaaaattttcaaaacggttctgtattcgttagaatctccagaagtctat
gggctcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCTGTATCCTCTGGAATTCCGG 417 441 2791 Antisense
ATTCCGGCTCCTTCTGTGAAAATTG 636 7 2809 Antisense
ATGAGCTTGACCTTTTCCAATGACA 510 45 2839 Antisense
GACAACGTGGCATACACGCAGGCGG 430 365 2860 Antisense
ACGCAGGCGGAGTACGGTTTTGTGG 492 87 2875 Antisense
AGGCCTCATCTTCGTCTAATTACCT 196 53 2924 Antisense
AATTACCTTCCAATACCATATCCAC 533 173 2941 Antisense
GGAACTATTGGCCTACACGAATTTT 348 529 2974 Antisense
TGCGTCATATTCTTATTCTGTTGGA 349 583 3008 Antisense
GACGAGCGCTCGAGGATTCTTGAAA 252 379 3201 Antisense
ATCTCCAGAAGTCTATGGGCTCTTG 644 33 3255 Antisense
Sequence Source Affymetrix Proprietary Database