[Home] | [Total List]

[185370_at]

Description C16A11.6 /REP_DB=WormBase Gene ID /WP=CE19356 /TR=O76582 /GB=AAK31412.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_high_8_8 > 13      6grp_highest_nonorm > 90      6grp_total > 86      4grp_total > 11      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 80.5
(-2.7)
P 		80.2
(-2.7)
P 		68.8
(-3)
P 		278
(3)
P 		209
B 69.4
(-2.8)
P 		84.3
(-2.2)
P 		65
(-3)
A 		203
(3)
P 		138
C 103
(-1.5)
P 		98.6
(-1.6)
P 		55.9
(-3)
P 		239.6
(3)
P 		184
avr 84.3
(-2.3) 		87.7
(-2.2) 		63.2
(-3) 		240.2
(3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 90.8
(-1.8)
P 		65.4
(-3)
P 		78.2
(-2.4)
P 		126.9
(-0)
P 		89.5
(-1.8)
P 		190.3
(3)
P 		125
B 86.9
(-3)
P 		103.7
(-1.9)
P 		101
(-2.1)
P 		88
(-2.9)
P 		140.4
(0.5)
P 		178.1
(3)
P 		91
C 67.8
(-3)
P 		69.1
(-2.9)
P 		75.5
(-2.4)
P 		106.2
(-0.2)
P 		102.9
(-0.4)
P 		149.5
(3)
P 		82
avr 81.8
(-2.8) 		79.4
(-3) 		84.9
(-2.6) 		107
(-1.2) 		110.9
(-1) 		172.6
(3) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 29.3
(0.1)
P 		17.4
(-3)
P 		18
(-2.8)
P 		40.7
(3)
P 		23
B 22.1
(-1.5)
P 		20.8
(-1.8)
P 		15.1
(-3)
A 		43.3
(3)
P 		28
C 34.1
(1.2)
P 		28.4
(-0.4)
P 		19.5
(-3)
P 		40.4
(3)
P 		21
avr 28.5
(-0.3) 		22.2
(-1.8) 		17.5
(-3) 		41.5
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 16.7
(-3)
P 		23.3
(-1.7)
P 		17
(-2.9)
P 		32.2
(0.1)
P 		27
(-0.9)
P 		46.3
(3)
P 		30
B 30.3
(-2)
P 		34.5
(-1.4)
P 		24.5
(-2.8)
P 		23.3
(-3)
P 		57.1
(1.7)
P 		66.4
(3)
P 		43
C 25.1
(-1.9)
P 		21.1
(-2.6)
P 		19.2
(-3)
P 		21.4
(-2.6)
P 		33.3
(-0.3)
P 		50
(3)
P 		31
avr 24
(-2.3) 		26.3
(-1.9) 		20.2
(-3) 		25.6
(-2) 		39.1
(0.3) 		54.2
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185370_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4510
Sequence Type Exemplar sequence
Representative Public ID C16A11.6 NCBI
Target Description C16A11.6 /REP_DB=WormBase Gene ID /WP=CE19356 /TR=O76582 /GB=AAK31412.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062345(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062345 NCBI Caenorhabditis elegans C16A11.6 (C16A11.6) mRNA, complete cds. 11/11 None
SNAP00000042939 ENSEMBL cdna:SNAP chromosome:CEL140:II:4228002:4235976:-1 11/11 None
GENEFINDER00000042951 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4234944:4237944:-1 11/11 None
C16A11.6 ENSEMBL cdna:known chromosome:CEL140:II:4234944:4237743:-1 gene:C16A11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4234942-4237943(-) 98.03 100.0
Public Domain and Genome References
Gene Title
Ensembl C16A11.6
Entrez Gene 173757 Entrez gene
SwissProt O76582 EMBL-EBI
WormBase CE36787 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31412 Hypothetical protein C16A11.6 [Caenorhabditis elegans] ref|NP_494746.2| C16A11.6 [Caenorhabditis elegans] 0.0
blast AAK31412 Hypothetical protein C16A11.6 [Caenorhabditis elegans] ref|NP_494746.2| C16A11.6 [Caenorhabditis elegans] 1.0E-135
blast AAF59576 Hypothetical protein Y54G2A.22 [Caenorhabditis elegans] ref|NP_500271.2| Y54G2A.22 [Caenorhabditis elegans] 8.0E-87
blast AAF59576 Hypothetical protein Y54G2A.22 [Caenorhabditis elegans] ref|NP_500271.2| Y54G2A.22 [Caenorhabditis elegans] 9.0E-87
blast AAB09127 Hypothetical protein M02B7.1 [Caenorhabditis elegans] ref|NP_500419.1| M02B7.1 [Caenorhabditis elegans] 1.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042951 1 35-57
Sequence
Target Sequence 
>C. ELEGANS:185370_AT
catgactcggtcatcggataaccccctaatcgaacgatttatcgatccgaagagcttgcc
attgaaaaactgttccacgccatcggaaggaactctacctgccgaattgatcagagctgg
tcttgacaatgatgctgaagttttcgattttctcaatttgattgacgctttgctccaaca
agaccgggaatacacaggccgttgcttcataactgaggatgtcgatttggttagtgaatt
attcgaagcattcactctactggcagaagaaaaagatcctgcgatttatgaagaagaaga
agatgaaaattttgacccatttgaagatgggtataccagatgcgatgaatttccaaatga
aatcgcattctggttcaacgatgatatggtcatttctgctgatgttaaggaaaagggaga
cgattttcaattgtggatatggcttcgcgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGACTCGGTCATCGGATAACCCC 273 209 1401 Antisense
TCGGATAACCCCCTAATCGAACGAT 314 599 1414 Antisense
ATCGATCCGAAGAGCTTGCCATTGA 522 35 1441 Antisense
ATTGAAAAACTGTTCCACGCCATCG 426 5 1461 Antisense
CCACGCCATCGGAAGGAACTCTACC 429 273 1475 Antisense
GAACTCTACCTGCCGAATTGATCAG 675 349 1490 Antisense
GACCGGGAATACACAGGCCGTTGCT 614 377 1582 Antisense
CAGGCCGTTGCTTCATAACTGAGGA 545 209 1595 Antisense
TATTCGAAGCATTCACTCTACTGGC 169 663 1640 Antisense
GAAATCGCATTCTGGTTCAACGATG 545 361 1759 Antisense
CAATTGTGGATATGGCTTCGCGAAG 49 181 1828 Antisense
Sequence Source Affymetrix Proprietary Database