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[185369_at]

Description C10H11.5 /REP_DB=WormBase Gene ID /WP=CE08094 /TR=P91037 /GB=AAB42345.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 02      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 510
1 2 3 4 range
A 4.8
(-3)
A 		5.1
(-2.9)
A 		1.7
(-3)
A 		400.4
(3)
P 		399
B 5.3
(-3)
A 		4.5
(-3)
A 		6.3
(-3)
A 		511.5
(3)
P 		507
C 3.6
(-3)
A 		2.8
(-3)
A 		4.5
(-3)
A 		503.9
(3)
P 		501
avr 4.6
(-3) 		4.1
(-3) 		4.2
(-3) 		471.9
(3) 		468

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 10.6
(-2.9)
A 		4.2
(-3)
A 		47
(-2.3)
A 		46.6
(-2.3)
A 		106.5
(-1.3)
P 		368.7
(3)
P 		365
B 1.4
(-3)
A 		7.7
(-2.9)
A 		4.9
(-2.9)
A 		7.3
(-2.9)
A 		114
(-1.2)
P 		376.8
(3)
P 		375
C 3.8
(-3)
A 		30.3
(-2.6)
A 		6.2
(-3)
A 		11.1
(-2.9)
A 		64.7
(-2.1)
P 		404.1
(3)
P 		400
avr 5.3
(-3) 		14.1
(-2.9) 		19.4
(-2.8) 		21.7
(-2.7) 		95.1
(-1.6) 		383.2
(3) 		378
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 1.8
(-2.9)
A 		1.1
(-2.9)
A 		0.4
(-3)
A 		58.6
(3)
P 		58
B 1.7
(-3)
A 		1.1
(-3)
A 		1.4
(-3)
A 		109
(3)
P 		108
C 1.2
(-3)
A 		0.8
(-3)
A 		1.6
(-2.9)
A 		85
(3)
P 		84
avr 1.6
(-3) 		1
(-3) 		1.1
(-3) 		84.2
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 1.9
(-3)
A 		1.5
(-3)
A 		10.2
(-2.4)
A 		11.8
(-2.3)
A 		32.1
(-0.9)
P 		89.8
(3)
P 		88
B 0.5
(-3)
A 		2.5
(-2.9)
A 		1.2
(-3)
A 		1.9
(-2.9)
A 		46.3
(-1)
P 		140.5
(3)
P 		140
C 1.4
(-3)
A 		9.3
(-2.6)
A 		1.6
(-3)
A 		2.2
(-3)
A 		20.9
(-2.1)
P 		135.3
(3)
P 		134
avr 1.3
(-3) 		4.4
(-2.8) 		4.3
(-2.9) 		5.3
(-2.8) 		33.1
(-1.4) 		121.9
(3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185369_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.360
Sequence Type Exemplar sequence
Representative Public ID C10H11.5 NCBI
Target Description C10H11.5 /REP_DB=WormBase Gene ID /WP=CE08094 /TR=P91037 /GB=AAB42345.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059035 NCBI Caenorhabditis elegans C10H11.5 (C10H11.5) mRNA, complete cds. 11/11 None
GENEFINDER00000015962 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4721216:4735230:1 11/11 None
SNAP00000015952 ENSEMBL cdna:SNAP chromosome:CEL140:I:4724066:4726764:1 11/11 None
C10H11.5 ENSEMBL cdna:known chromosome:CEL140:I:4724066:4726764:1 gene:C10H11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4724065-4726764(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ugt-27
Ensembl C10H11.5
Entrez Gene 182508 Entrez gene
SwissProt P91037 EMBL-EBI
WormBase CE08094 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42345 Udp-glucuronosyltransferase protein 27 [Caenorhabditis elegans] ref|NP_491436.1| C10H11.5 [Caenorhabditis elegans] 0.0
blast CAE60367 Hypothetical protein CBG03966 [Caenorhabditis briggsae] 0.0
blast AAB42344 Udp-glucuronosyltransferase protein 28 [Caenorhabditis elegans] ref|NP_491437.1| C10H11.4 [Caenorhabditis elegans] 0.0
blast AAB42350 Udp-glucuronosyltransferase protein 26 [Caenorhabditis elegans] ref|NP_491435.2| C10H11.6 [Caenorhabditis elegans] 0.0
blast AAB42343 Udp-glucuronosyltransferase protein 25 [Caenorhabditis elegans] ref|NP_491438.1| C10H11.3 [Caenorhabditis elegans] 1.0E-167
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.8E-15
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.7E-20
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.0E-17
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.8E-15
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.7E-20
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.9E-6
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.3E-18
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 8.8E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491436.1 1 495-517
C10H11.5 1 495-517
GENEFINDER00000015962 3 509-531,998-1020,1987-2009
SNAP00000015952 1 495-517
Sequence
Target Sequence 
>C. ELEGANS:185369_AT
acaaatgacacctcttttgcctttggtattgataatatttacttttccaagtgggttcca
caatctaaactactgaatgatgctcgattaactgcatttttgactcatgggggtcttgga
tctacaaatgaacttgcacattttggaaaacccgccgtaatggttccaatatttggtgat
caatatagaaatggacatatgcttcaacgacatggatgtgcaattattgttcagaaaact
gagttgagcaattggaaaattgtgagctcggctgtgaaatcagttttatacgatgagaac
tacaaaaagaatgcggcgcatttggcggatttactgcaaaatcaaccggttaagccgaag
gaaattgtcgtgaaatatgtagagtttgtggcaagattcgggccatttcccgaaatggat
gcatatggtcggcagctgaatttcattcaacgaaatcttctagacgtgtaccttatcgaa
ctttttggacattttttgttctttcttatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAATGACACCTCTTTTGCCTTTG 229 109 1030 Antisense
GTGGGTTCCACAATCTAAACTACTG 236 485 1080 Antisense
ACTCATGGGGGTCTTGGATCTACAA 217 101 1132 Antisense
TGCACATTTTGGAAAACCCGCCGTA 381 577 1164 Antisense
GGACATATGCTTCAACGACATGGAT 385 525 1222 Antisense
GCGGCGCATTTGGCGGATTTACTGC 576 293 1342 Antisense
TGGCAAGATTCGGGCCATTTCCCGA 122 547 1418 Antisense
ATGGTCGGCAGCTGAATTTCATTCA 71 51 1454 Antisense
AAATCTTCTAGACGTGTACCTTATC 589 117 1482 Antisense
GTACCTTATCGAACTTTTTGGACAT 389 457 1497 Antisense
GACATTTTTTGTTCTTTCTTATCAT 277 371 1517 Antisense
Sequence Source Affymetrix Proprietary Database