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[185368_at]

Description W10G11.3 /REP_DB=WormBase Gene ID /WP=CE14806 /TR=O44920 /GB=AAG24212.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 888
1 2 3 4 range
A 116
(-2.5)
A 		107.8
(-2.6)
A 		61.5
(-3)
A 		784.1
(3)
P 		723
B 136.4
(-2.6)
A 		75.7
(-3)
A 		90.6
(-2.9)
A 		936.2
(3)
P 		861
C 104.1
(-2.5)
A 		62.9
(-2.9)
A 		48.4
(-3)
A 		713
(3)
P 		665
avr 118.8
(-2.6) 		82.1
(-2.9) 		66.8
(-3) 		811.1
(3) 		744

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 378
1 2 3 4 5 6 range
A 74.2
(-1.9)
A 		20.3
(-2.8)
A 		42.4
(-2.4)
A 		7.6
(-3)
A 		71.4
(-2)
A 		381.9
(3)
P 		374
B 7.4
(-2.9)
A 		4.1
(-3)
A 		7.7
(-2.9)
A 		7.7
(-2.9)
A 		94.6
(-1.1)
A 		286.6
(3)
P 		283
C 5.5
(-3)
A 		29.7
(-2.5)
A 		41.2
(-2.2)
A 		5
(-3)
A 		117.7
(-0.6)
A 		289
(3)
P 		284
avr 29
(-2.6) 		18
(-2.8) 		30.4
(-2.5) 		6.8
(-3) 		94.6
(-1.3) 		319.2
(3) 		312
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 42.2
(-1.4)
A 		23.4
(-2.6)
A 		16.1
(-3)
A 		114.8
(3)
P 		99
B 43.5
(-2.2)
A 		18.7
(-3)
A 		21
(-2.9)
A 		199.5
(3)
P 		181
C 34.5
(-2)
A 		18.1
(-2.9)
A 		16.9
(-3)
A 		120.2
(3)
P 		103
avr 40.1
(-2) 		20.1
(-2.9) 		18
(-3) 		144.8
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 13.7
(-2.2)
A 		7.2
(-2.7)
A 		9.2
(-2.5)
A 		1.9
(-3)
A 		21.5
(-1.7)
A 		93
(3)
P 		91
B 2.6
(-2.9)
A 		1.4
(-3)
A 		1.9
(-3)
A 		2
(-3)
A 		38.4
(-0.9)
A 		106.9
(3)
P 		106
C 2
(-2.9)
A 		9.1
(-2.5)
A 		10.5
(-2.4)
A 		1
(-3)
A 		38.1
(-0.7)
A 		96.7
(3)
P 		96
avr 6.1
(-2.7) 		5.9
(-2.7) 		7.2
(-2.7) 		1.6
(-3) 		32.7
(-1.1) 		98.9
(3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185368_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4906
Sequence Type Exemplar sequence
Representative Public ID W10G11.3 NCBI
Target Description W10G11.3 /REP_DB=WormBase Gene ID /WP=CE14806 /TR=O44920 /GB=AAG24212.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062175(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062175 NCBI Caenorhabditis elegans W10G11.3 (W10G11.3) mRNA, complete cds. 11/11 None
SNAP00000013258 ENSEMBL cdna:SNAP chromosome:CEL140:II:3561814:3562508:-1 10/11 None
GENEFINDER00000013284 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3561814:3562508:-1 10/11 None
W10G11.3 ENSEMBL cdna:known chromosome:CEL140:II:3561814:3562559:-1 gene:W10G11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3561812-3562558(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10G11.3
Entrez Gene 173704 Entrez gene
SwissProt O44920 EMBL-EBI
WormBase CE14806 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24212 Hypothetical protein W10G11.3 [Caenorhabditis elegans] ref|NP_494576.1| W10G11.3 [Caenorhabditis elegans] 1.0E-121
blast AAG24212 Hypothetical protein W10G11.3 [Caenorhabditis elegans] ref|NP_494576.1| W10G11.3 [Caenorhabditis elegans] 1.0E-112
blast C88104 protein W10G11.1 [imported] - Caenorhabditis elegans 8.0E-62
blast C88104 protein W10G11.1 [imported] - Caenorhabditis elegans 9.0E-62
blast AAG24211 Hypothetical protein W10G11.2 [Caenorhabditis elegans] ref|NP_494575.2| W10G11.2 [Caenorhabditis elegans] 1.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 9.9E-82
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 9.9E-82
Sequence
Target Sequence 
>C. ELEGANS:185368_AT
gtcacttttcacgttatgtgtcgtaaattgacagtatttatggctattctgatattcgtg
acggcgacgtgtgaagctttagattgtacaaatcctgaagtcccagaaactacgaaatgt
ttggagatatttaaggaacttggtgaaaacataatcagacttgatatttccaacaaaacc
ggccccacaaaagtgatcgaaatctgtataaacttcaaccgttgccgccagacactcgat
tgtcaacccgacaaggtttttgccatcgttgtcaacacaggcctaatgttctgcgagtac
gctcagttcttcctcgatacattcgtcccttgccaggtcaagattgacgccaaagcttcc
gagtgctctaaaaactgggatccctacccgagtgagatttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACTTTTCACGTTATGTGTCGTA 577 465 49 Antisense
GGCTATTCTGATATTCGTGACGGCG 662 537 90 Antisense
CTGTATAAACTTCAACCGTTGCCGC 233 239 252 Antisense
CAGACACTCGATTGTCAACCCGACA 380 205 277 Antisense
CCCGACAAGGTTTTTGCCATCGTTG 486 255 295 Antisense
GCCATCGTTGTCAACACAGGCCTAA 101 281 310 Antisense
GGCCTAATGTTCTGCGAGTACGCTC 26 543 328 Antisense
TCAGTTCTTCCTCGATACATTCGTC 222 623 351 Antisense
TTCGTCCCTTGCCAGGTCAAGATTG 653 687 370 Antisense
AAGATTGACGCCAAAGCTTCCGAGT 248 155 388 Antisense
GGATCCCTACCCGAGTGAGATTTCG 196 513 426 Antisense
Sequence Source Affymetrix Proprietary Database