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[185367_at]

Description C04E12.4 /REP_DB=WormBase Gene ID /WP=CE16817 /TR=O76677 /GB=AAC27090.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 54      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 191.5
(3)
P 		77.9
(-1.3)
P 		100.7
(-0.4)
P 		32.9
(-3)
A 		159
B 179.5
(3)
P 		103.7
(0.3)
P 		89.4
(-0.3)
P 		13.6
(-3)
A 		166
C 218.5
(3)
P 		154.6
(0.6)
P 		132.4
(-0.2)
P 		58.1
(-3)
M 		160
avr 196.5
(3) 		112.1
(-0.1) 		107.5
(-0.3) 		34.9
(-3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 101.4
(-0.4)
P 		207.3
(3)
P 		192.9
(2.5)
P 		84.4
(-0.9)
P 		64.2
(-1.6)
P 		20.2
(-3)
A 		187
B 178.7
(1.7)
P 		168.7
(1.4)
P 		223.3
(3)
P 		106.1
(-0.3)
P 		76.1
(-1.2)
P 		12.1
(-3)
A 		211
C 161.9
(2.8)
P 		167.3
(3)
P 		167.4
(3)
P 		92.9
(0.2)
P 		68.3
(-0.7)
P 		8.4
(-3)
A 		159
avr 147.3
(1.4) 		181.1
(2.6) 		194.5
(3) 		94.5
(-0.3) 		69.5
(-1.1) 		13.6
(-3) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 69.7
(3)
P 		16.9
(-1.9)
P 		26.3
(-1)
P 		4.8
(-3)
A 		65
B 57.2
(3)
P 		25.6
(-0.5)
P 		20.7
(-1)
P 		2.9
(-3)
A 		54
C 72.3
(3)
P 		44.5
(0.3)
P 		46.2
(0.5)
P 		9.8
(-3)
M 		63
avr 66.4
(3) 		29
(-0.7) 		31.1
(-0.5) 		5.8
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 18.7
(-1.8)
P 		73.7
(3)
P 		42
(0.2)
P 		21.4
(-1.6)
P 		19.4
(-1.7)
P 		4.9
(-3)
A 		69
B 62.2
(3)
P 		56.1
(2.4)
P 		54.2
(2.2)
P 		28.1
(-0.5)
P 		30.9
(-0.3)
P 		4.5
(-3)
A 		58
C 60
(3)
P 		51.1
(2.1)
P 		42.6
(1.2)
P 		18.7
(-1.3)
P 		22.1
(-1)
P 		2.8
(-3)
A 		57
avr 47
(1.6) 		60.3
(3) 		46.3
(1.5) 		22.7
(-1) 		24.1
(-0.9) 		4.1
(-3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15120
Sequence Type Exemplar sequence
Representative Public ID C04E12.4 NCBI
Target Description C04E12.4 /REP_DB=WormBase Gene ID /WP=CE16817 /TR=O76677 /GB=AAC27090.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071535(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071535 NCBI Caenorhabditis elegans C04E12.4 (C04E12.4) mRNA, complete cds. 11/11 None
SNAP00000029749 ENSEMBL cdna:SNAP chromosome:CEL140:V:3362626:3365460:1 9/11 None
GENEFINDER00000029761 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3362626:3368866:1 11/11 None
C04E12.4 ENSEMBL cdna:known chromosome:CEL140:V:3362626:3368167:1 gene:C04E12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008841 1/11 Cross Hyb Matching Probes None
GENEFINDER00000008868 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3362625-3365460(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04E12.4
Entrez Gene 178767 Entrez gene
SwissProt O76677 EMBL-EBI
WormBase CE30721 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC27089 Hypothetical protein C04E12.4 [Caenorhabditis elegans] ref|NP_503936.2| C04E12.4 [Caenorhabditis elegans] 0.0
blast T33413 hypothetical protein C04E12.4 - Caenorhabditis elegans 0.0
blast AAC27091 Hypothetical protein C04E12.5 [Caenorhabditis elegans] ref|NP_503935.2| C04E12.5 [Caenorhabditis elegans] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 1.1E-37
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.9E-39
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 2.8E-46
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.9E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503936.2 1 30-52
C04E12.4 1 30-52
SNAP00000029749 1 30-52
GENEFINDER00000029761 1 30-52
Sequence
Target Sequence 
>C. ELEGANS:185367_AT
cttgtcttcaaccttctgaagtttgtaaagacattccagtaggcggtgttttaatttttg
agaaaccggaatctgaaactctaactgtaggaataaaactgttcaaggatatccaacttt
ttggtcgcgatgagaagtgtacagaatgtggaaagtttgagaggggatttacagtcaaag
ccttctggaagtcactgtatctagctgaaaagatcacaacacaaaataagcttatccaat
tcaatccgaattccggggacaactacgtaaaatttacgtatagcattctcaacaacactt
attcacatgataatatagatggatcaccagttgcgccatattttgttgataaaatcgaac
gattagtagacagaacaaataatgaagtgtacttgcgccaggagtttcccggcgtctttt
caaatatgtattgggcgttcaatttgacgaacgatggaaaattagttgaaaaagtcgtca
tctcaattcccggaatagaagaactcaccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGTCTTCAACCTTCTGAAGTTTG 504 217 617 Antisense
GACATTCCAGTAGGCGGTGTTTTAA 357 371 646 Antisense
TGAGAAACCGGAATCTGAAACTCTA 130 569 675 Antisense
CAAGGATATCCAACTTTTTGGTCGC 652 181 720 Antisense
AGCCTTCTGGAAGTCACTGTATCTA 485 83 795 Antisense
GGAAGTCACTGTATCTAGCTGAAAA 34 533 803 Antisense
ATAAGCTTATCCAATTCAATCCGAA 606 25 842 Antisense
TCAATCCGAATTCCGGGGACAACTA 63 633 857 Antisense
GAAGTGTACTTGCGCCAGGAGTTTC 461 335 1000 Antisense
TTCCCGGCGTCTTTTCAAATATGTA 62 697 1022 Antisense
TCCCGGAATAGAAGAACTCACCAAT 582 597 1104 Antisense
Sequence Source Affymetrix Proprietary Database