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[185366_at] 7TM chemoreceptor, srt family

Description T06C10.2 /REP_DB=WormBase Gene ID /WP=CE04900 /TR=Q22246 /GB=AAA82303.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 09      6grp_total_sub > Hat      6grp_cgc > 54      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 23.9
(-3)
A 		27.2
(-2.8)
A 		46.8
(-1.7)
A 		130
(3)
P 		106
B 23
(-2.8)
P 		19
(-3)
A 		28.5
(-2.5)
A 		124.8
(3)
P 		106
C 19
(-2.8)
A 		42.7
(-1.7)
P 		14.9
(-3)
A 		139.2
(3)
P 		124
avr 22
(-3) 		29.6
(-2.6) 		30.1
(-2.6) 		131.3
(3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 18.7
(-2.5)
A 		15.4
(-3)
A 		55.6
(3)
P 		22.8
(-1.9)
A 		41.3
(0.9)
P 		42.3
(1)
A 		40
B 36.9
(3)
P 		32.5
(2.2)
A 		30.8
(1.9)
A 		3.3
(-3)
A 		23
(0.5)
A 		31.5
(2)
A 		34
C 3.6
(-3)
A 		49.1
(3)
P 		4.6
(-2.9)
A 		17.7
(-1.1)
A 		23.2
(-0.4)
A 		6.9
(-2.6)
A 		46
avr 19.7
(-1.3) 		32.3
(3) 		30.3
(2.3) 		14.6
(-3) 		29.2
(1.9) 		26.9
(1.2) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 8.7
(-1.7)
A 		5.9
(-3)
A 		12.2
(-0.1)
A 		19
(3)
P 		13
B 7.3
(-2.3)
P 		4.7
(-3)
A 		6.6
(-2.5)
A 		26.6
(3)
P 		22
C 6.3
(-2.6)
A 		12.3
(-0.7)
P 		5.2
(-3)
A 		23.5
(3)
P 		18
avr 7.4
(-3) 		7.6
(-2.9) 		8
(-2.8) 		23
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.4
(-3)
A 		5.5
(-1.6)
A 		12.1
(2.7)
P 		5.8
(-1.4)
A 		12.5
(3)
P 		10.3
(1.5)
A 		9
B 12.8
(3)
P 		10.8
(2)
A 		7.5
(0.3)
A 		0.9
(-3)
A 		9.3
(1.2)
A 		11.7
(2.4)
A 		12
C 1.3
(-3)
A 		15
(3)
P 		1.2
(-3)
A 		3.6
(-2)
A 		7.5
(-0.3)
A 		2.3
(-2.5)
A 		14
avr 5.8
(-0.9) 		10.4
(3) 		6.9
(0) 		3.4
(-3) 		9.8
(2.5) 		8.1
(1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185366_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10199
Sequence Type Exemplar sequence
Representative Public ID T06C10.2 NCBI
Target Description T06C10.2 /REP_DB=WormBase Gene ID /WP=CE04900 /TR=Q22246 /GB=AAA82303.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068909(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068909 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-73) (srt-73) mRNA, complete cds. 11/11 None
GENEFINDER00000043505 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7879300:7881017:1 11/11 None
T06C10.2 ENSEMBL cdna:known chromosome:CEL140:IV:7879300:7881017:1 gene:T06C10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043499 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7879305-7881023(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-73
Ensembl T06C10.2
Entrez Gene 188159 Entrez gene
SwissProt Q22246 EMBL-EBI
WormBase CE37987 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501310 Serpentine Receptor, class T family member (srt-73) [Caenorhabditis elegans] gb|AAA82303.2| Serpentine receptor, class t protein 73 [Caenorhabditis elegans] 1.0E-176
blast NP_501310 Serpentine Receptor, class T family member (srt-73) [Caenorhabditis elegans] gb|AAA82303.2| Serpentine receptor, class t protein 73 [Caenorhabditis elegans] 1.0E-174
blast CAE70901 Hypothetical protein CBG17697 [Caenorhabditis briggsae] 1.0E-119
blast NP_503842 Serpentine Receptor, class T family member (srt-7) [Caenorhabditis elegans] gb|AAG23992.1| Serpentine receptor, class t protein 7 [Caenorhabditis elegans] 2.0E-12
blast NP_492842 Serpentine Receptor, class T family member (srt-61) [Caenorhabditis elegans] 5.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.6E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501310.2 7 37-56,77-99,109-131,152-174,205-224,237-259,269-291
T06C10.2 7 37-56,77-99,109-131,152-174,205-224,237-259,269-291
GENEFINDER00000043505 7 37-56,77-99,109-131,152-174,209-228,241-263,273-295
Sequence
Target Sequence 
>C. ELEGANS:185366_AT
gtttatgatatctttctttgacacaattcaattatttatacatctaactgcagtattcta
cattttaaattctaaacctcactttgattttcccgattatttaatcggagctgtgatgaa
tgcatcatgggtctcaatgctcattctcagcatatttttaaatattaatcggctcatttc
aattgtttttcattttcaatccaacaaaatatttaattctttcaatatgaaaatatattt
cactatagttctaattgtatggtgtatagcttcaaatccattatcagctgtattaaggtc
taaagcagcattattgtcaaagaaagaattaatattgacaattcaagtattatgtgtttc
tatatttcatgttattgggtatttgacatgggaatatctaccaattccatgggaattacc
aattggagtgttcattggacatgttgtatggatgatttggaattcaatcaattcaatgct
ttatgtattaattaatcctcgtattcgtaacctggtattagcatcaattggaaaacaaac
agaagtcagtggacgtacaatgtttgttgcttcgcacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTATGATATCTTTCTTTGACACA 612 449 240 Antisense
ACATCTAACTGCAGTATTCTACATT 481 105 279 Antisense
TAAACCTCACTTTGATTTTCCCGAT 698 639 312 Antisense
ATCATGGGTCTCAATGCTCATTCTC 459 29 363 Antisense
GCTCATTCTCAGCATATTTTTAAAT 261 301 378 Antisense
AATCGGCTCATTTCAATTGTTTTTC 485 169 406 Antisense
GGTGTATAGCTTCAAATCCATTATC 2 501 500 Antisense
GAATATCTACCAATTCCATGGGAAT 104 325 631 Antisense
TAATCCTCGTATTCGTAACCTGGTA 704 633 732 Antisense
GTAACCTGGTATTAGCATCAATTGG 606 461 746 Antisense
GTACAATGTTTGTTGCTTCGCACGT 402 461 794 Antisense
Sequence Source Affymetrix Proprietary Database