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[185365_at] 7TM chemoreceptor, srx family

Description F19B10.7 /REP_DB=WormBase Gene ID /WP=CE09474 /TR=O02071 /GB=AAB52928.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 14      6grp_cgc > 14      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 23.4
(0.1)
A 		8.7
(-2.1)
A 		2.6
(-3)
A 		43.3
(3)
A 		41
B 33.3
(2.7)
A 		9.5
(-1.9)
A 		4
(-3)
A 		34.9
(3)
A 		31
C 38
(1.4)
A 		3.9
(-3)
A 		8.7
(-2.4)
A 		50.9
(3)
A 		47
avr 31.6
(1.2) 		7.4
(-2.6) 		5.1
(-3) 		43
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 52.1
(3)
A 		18.5
(-1.2)
A 		24.8
(-0.4)
A 		5.3
(-2.9)
A 		4.6
(-3)
A 		14.4
(-1.8)
A 		48
B 18
(-1.2)
A 		36.8
(3)
A 		10.2
(-3)
A 		11.6
(-2.7)
A 		17.3
(-1.4)
A 		32.3
(2)
A 		27
C 20.4
(-0.6)
A 		46.4
(3)
A 		3
(-3)
A 		26
(0.2)
A 		4.5
(-2.8)
A 		3.1
(-3)
A 		43
avr 30.2
(2.1) 		33.9
(3) 		12.7
(-2.1) 		14.3
(-1.7) 		8.8
(-3) 		16.6
(-1.1) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.5
(3)
A 		1.9
(-2.1)
A 		0.7
(-3)
A 		6.3
(1.3)
A 		8
B 10.6
(3)
A 		2.4
(-2.1)
A 		0.9
(-3)
A 		7.4
(1)
A 		10
C 12.6
(3)
A 		1.1
(-3)
A 		3
(-2)
A 		8.6
(0.9)
A 		12
avr 10.6
(3) 		1.8
(-2.8) 		1.5
(-3) 		7.4
(0.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 9.6
(3)
A 		6.6
(0.8)
A 		5.4
(-0)
A 		1.3
(-3)
A 		1.4
(-2.9)
A 		3.5
(-1.4)
A 		8
B 6.3
(-0.6)
A 		12.2
(3)
A 		2.5
(-3)
A 		3.1
(-2.6)
A 		7
(-0.2)
A 		12.1
(2.9)
A 		10
C 7.5
(0)
A 		14.2
(3)
A 		0.8
(-3)
A 		5.2
(-1)
A 		1.5
(-2.7)
A 		1
(-2.9)
A 		13
avr 7.8
(0.6) 		11
(3) 		2.9
(-3) 		3.2
(-2.8) 		3.3
(-2.7) 		5.5
(-1.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185365_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4444
Sequence Type Exemplar sequence
Representative Public ID F19B10.7 NCBI
Target Description F19B10.7 /REP_DB=WormBase Gene ID /WP=CE09474 /TR=O02071 /GB=AAB52928.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062208(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062208 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-97) (srx-97) mRNA, complete cds. 11/11 None
SNAP00000017117 ENSEMBL cdna:SNAP chromosome:CEL140:II:3667173:3668658:-1 11/11 None
GENEFINDER00000017138 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3667173:3668658:-1 11/11 None
F19B10.7 ENSEMBL cdna:known chromosome:CEL140:II:3667173:3668658:-1 gene:F19B10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3667171-3668657(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-97
Ensembl F19B10.7
Entrez Gene 184672 Entrez gene
SwissProt O02071 EMBL-EBI
WormBase CE09474 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52928 Serpentine receptor, class x protein 97 [Caenorhabditis elegans] ref|NP_494609.1| Serpentine Receptor, class X family member (srx-97) [Caenorhabditis elegans] 1.0E-176
blast CAE73848 Hypothetical protein CBG21423 [Caenorhabditis briggsae] 1.0E-136
blast AAB52927 Serpentine receptor, class x protein 98 [Caenorhabditis elegans] ref|NP_494610.2| Serpentine Receptor, class X family member (srx-98) [Caenorhabditis elegans] 1.0E-122
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494609.1 7 27-49,69-91,106-128,141-163,194-216,237-259,269-291
F19B10.7 7 27-49,69-91,106-128,141-163,194-216,237-259,269-291
SNAP00000017117 7 27-49,69-91,106-128,141-163,194-216,237-259,269-291
GENEFINDER00000017138 7 27-49,69-91,106-128,141-163,194-216,237-259,269-291
Sequence
Target Sequence 
>C. ELEGANS:185365_AT
gtacaaggcccaatgactcaagtctgcatatcatttaatcgatttatggtgatctacttt
gtctcgctggcgaaacggaaaagtgggaggctagcgacaattacagccctttgcacatgc
tggacgatttcttttatagttacaattgcgggaattccaaagaactgtacgaatatattc
aattacgaaattctgacctgggacaatttggatccgtgtgttgacattttggcggacgcc
gtgatgtattggatcgggtttttggcgattatctcgaacacttttaatgtggtagttgcc
gtgaagcttattgtgtctgcgagcaaaccccacatggactccacagcttcaaagcgtcgc
aaaagaacctccagaaatctattcctccagtcctgcttccaagattgggtgtacctaatc
gacacgataaatagtatgtacatctactcctggttcagcgatattctttggcaatttttc
ttcacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACAAGGCCCAATGACTCAAGTCT 20 461 343 Antisense
TTTATGGTGATCTACTTTGTCTCGC 182 673 385 Antisense
TAGCGACAATTACAGCCCTTTGCAC 541 651 434 Antisense
GTGTGTTGACATTTTGGCGGACGCC 518 485 558 Antisense
GCGGACGCCGTGATGTATTGGATCG 44 293 574 Antisense
TATTGTGTCTGCGAGCAAACCCCAC 457 665 651 Antisense
GACTCCACAGCTTCAAAGCGTCGCA 26 375 679 Antisense
ACCTCCAGAAATCTATTCCTCCAGT 21 89 709 Antisense
TCCAGTCCTGCTTCCAAGATTGGGT 62 591 728 Antisense
TACATCTACTCCTGGTTCAGCGATA 104 643 781 Antisense
TTCTTTGGCAATTTTTCTTCACGAT 28 691 806 Antisense
Sequence Source Affymetrix Proprietary Database