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[185364_at]

Description R13D11.1 /REP_DB=WormBase Gene ID /WP=CE12784 /TR=O17016 /GB=AAB69943.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 2
(-3)
A 		28.1
(-0.8)
A 		28.4
(-0.8)
A 		73.4
(3)
M 		71
B 41.1
(1.8)
A 		48.5
(3)
A 		10.7
(-3)
A 		18.6
(-1.7)
A 		38
C 27.7
(1.3)
A 		5.8
(-3)
A 		21
(-0)
A 		36.2
(3)
A 		30
avr 23.6
(-2) 		27.5
(-1) 		20
(-3) 		42.7
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 8.2
(-2)
A 		24.7
(1)
A 		23.5
(0.8)
A 		36.1
(3)
A 		6.6
(-2.3)
A 		2.5
(-3)
A 		34
B 17.3
(-3)
A 		27.1
(0.4)
A 		27.1
(0.4)
A 		34.6
(3)
A 		28
(0.7)
A 		25.9
(-0)
A 		17
C 30.5
(-0.9)
A 		68.8
(3)
A 		10.3
(-3)
A 		15.4
(-2.5)
A 		31.6
(-0.8)
A 		29.8
(-1)
A 		59
avr 18.7
(-3) 		40.2
(3) 		20.3
(-2.6) 		28.7
(-0.2) 		22.1
(-2.1) 		19.4
(-2.8) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.7
(-3)
A 		6.1
(0.2)
A 		7.4
(1)
A 		10.8
(3)
M 		10
B 13.1
(3)
A 		12
(2.4)
A 		2.5
(-3)
A 		4
(-2.2)
A 		11
C 9.2
(3)
A 		1.7
(-3)
A 		7.3
(1.5)
A 		6.1
(0.5)
A 		8
avr 7.7
(3) 		6.6
(-0.3) 		5.7
(-3) 		7
(0.9) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.5
(-2.4)
A 		8.8
(2.7)
A 		5.1
(0.1)
A 		9.2
(3)
A 		2
(-2)
A 		0.6
(-3)
A 		9
B 6
(-3)
A 		9
(0.3)
A 		6.6
(-2.3)
A 		9.2
(0.6)
A 		11.4
(3)
A 		9.7
(1.1)
A 		5
C 11.3
(-0.2)
A 		21
(3)
A 		2.6
(-3)
A 		3.1
(-2.8)
A 		10.2
(-0.5)
A 		10
(-0.6)
A 		18
avr 6.3
(-1.9) 		12.9
(3) 		4.8
(-3) 		7.2
(-1.2) 		7.9
(-0.7) 		6.8
(-1.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185364_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15107
Sequence Type Exemplar sequence
Representative Public ID R13D11.1 NCBI
Target Description R13D11.1 /REP_DB=WormBase Gene ID /WP=CE12784 /TR=O17016 /GB=AAB69943.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070931(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070931 NCBI Caenorhabditis elegans R13D11.1 (R13D11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000031838 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:817312:818563:1 10/11 None
R13D11.1 ENSEMBL cdna:known chromosome:CEL140:V:817312:818563:1 gene:R13D11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031834 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:817311-818563(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13D11.1
Entrez Gene 187861 Entrez gene
SwissProt O17016 EMBL-EBI
WormBase CE12784 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503332 R13D11.1 [Caenorhabditis elegans] gb|AAB69943.1| Hypothetical protein R13D11.1 [Caenorhabditis elegans] 1.0E-166
blast NP_503332 R13D11.1 [Caenorhabditis elegans] gb|AAB69943.1| Hypothetical protein R13D11.1 [Caenorhabditis elegans] 1.0E-164
blast AAC69212 Hypothetical protein F41H8.2 [Caenorhabditis elegans] ref|NP_503335.2| F41H8.2 [Caenorhabditis elegans] 1.0E-135
blast AAC69212 Hypothetical protein F41H8.2 [Caenorhabditis elegans] ref|NP_503335.2| F41H8.2 [Caenorhabditis elegans] 1.0E-128
blast NP_503331 R13D11.3 [Caenorhabditis elegans] gb|AAK82916.1| Hypothetical protein R13D11.3 [Caenorhabditis elegans] 1.0E-121
blast NP_503331 R13D11.3 [Caenorhabditis elegans] gb|AAK82916.1| Hypothetical protein R13D11.3 [Caenorhabditis elegans] 1.0E-114
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503332.1 7 15-40,53-75,90-112,125-147,169-191,220-242,252-274
R13D11.1 7 15-40,53-75,90-112,125-147,169-191,220-242,252-274
GENEFINDER00000031838 7 15-40,53-75,104-126,139-158,178-200,229-251,261-283
Sequence
Target Sequence 
>C. ELEGANS:185364_AT
tttcggcgacagttactgccctattcttcccttcactattccgccgaatggatcttgggg
atttttccaatggagtcatcctggtcgcaattatctttgcactttttgatgatttcttgt
actggtacactactacaatcgagcatcatttgaattgcggaactatcggatgttttgtca
gcgatcgattcagatactactgggggatttctaatatgattcttggtttcatggcagttg
ctctttcaatcacaatcttctggaaacttcaaatggtgtcgaagaagaaaagctcagatc
ctggaggatccaagagcaagtacgctaaagcaaatcgcacatcaactggaattctcatgt
cttctttgctgtttatcacggtgccaagtgtttgcgtgggcgttgtggagctcacaggat
tttcaattttcaagctaatcggcccattttactcggcctgcttgctagtcagtggttgtt
gcaatggaattatttttattagtagtaactgggacaatgtgaaactgaaaaagccaaaaa
catcagtcatcatggttaccagggcgtcaatagtaccgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGGCGACAGTTACTGCCCTATT 354 669 323 Antisense
CCTTCACTATTCCGCCGAATGGATC 194 269 352 Antisense
GAGTCATCCTGGTCGCAATTATCTT 633 397 395 Antisense
GATTCTTGGTTTCATGGCAGTTGCT 25 431 540 Antisense
GGCAGTTGCTCTTTCAATCACAATC 565 535 555 Antisense
ATCGCACATCAACTGGAATTCTCAT 132 37 656 Antisense
GTCTTCTTTGCTGTTTATCACGGTG 310 469 681 Antisense
GTGGGCGTTGTGGAGCTCACAGGAT 12 489 718 Antisense
TAATCGGCCCATTTTACTCGGCCTG 488 149 758 Antisense
GCCTGCTTGCTAGTCAGTGGTTGTT 441 283 778 Antisense
TACCAGGGCGTCAATAGTACCGTCA 212 645 879 Antisense
Sequence Source Affymetrix Proprietary Database