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[185362_at]

Description Y38E10A.1 /REP_DB=WormBase Gene ID /WP=CE21581 /TR=Q9NAK9 /GB=CAB54392.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 1.1
(-3)
A 		43.8
(3)
A 		33.2
(1.5)
P 		32.2
(1.4)
A 		43
B 9.4
(-3)
A 		55.6
(3)
P 		10.8
(-2.8)
A 		25.5
(-0.9)
A 		46
C 4.1
(-3)
A 		18.1
(-1.7)
M 		21.9
(-1.4)
A 		70.9
(3)
A 		67
avr 4.9
(-3) 		39.2
(2.4) 		22
(-0.3) 		42.9
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 42
(3)
A 		21.7
(-0.7)
A 		20.7
(-0.9)
A 		21.7
(-0.7)
A 		9.2
(-3)
A 		38.4
(2.3)
A 		33
B 17.3
(-1.1)
A 		11.9
(-2.3)
A 		35.2
(3)
A 		8.7
(-3)
A 		24.3
(0.5)
P 		14.8
(-1.6)
A 		27
C 19.7
(-0.3)
A 		33.9
(3)
M 		24.1
(0.7)
A 		8.9
(-2.8)
A 		15.2
(-1.3)
A 		7.9
(-3)
A 		26
avr 26.3
(2.8) 		22.5
(1.1) 		26.7
(3) 		13.1
(-3) 		16.2
(-1.6) 		20.4
(0.2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.4
(-3)
A 		9.5
(3)
A 		8.7
(2.5)
P 		4.7
(-0.2)
A 		9
B 3
(-2.7)
A 		13.7
(3)
P 		2.5
(-3)
A 		5.4
(-1.4)
A 		11
C 1.3
(-3)
A 		5.2
(-0.8)
M 		7.6
(0.5)
A 		12
(3)
A 		11
avr 1.6
(-3) 		9.5
(3) 		6.3
(0.6) 		7.4
(1.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 7.7
(1.5)
A 		7.7
(1.5)
A 		4.5
(-1.5)
A 		5.5
(-0.5)
A 		2.8
(-3)
A 		9.4
(3)
A 		7
B 6
(-0.1)
A 		4
(-1.7)
A 		8.6
(2)
A 		2.3
(-3)
A 		9.9
(3)
P 		5.5
(-0.5)
A 		8
C 7.3
(0.9)
A 		10.3
(3)
M 		6.1
(0)
A 		1.8
(-3)
A 		4.9
(-0.8)
A 		2.6
(-2.4)
A 		9
avr 7
(2.6) 		7.3
(3) 		6.4
(1.7) 		3.2
(-3) 		5.9
(1) 		5.8
(0.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185362_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3949
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.1 NCBI
Target Description Y38E10A.1 /REP_DB=WormBase Gene ID /WP=CE21581 /TR=Q9NAK9 /GB=CAB54392.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064283(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064283 NCBI Caenorhabditis elegans Y38E10A.1 (Y38E10A.1) mRNA, complete cds. 11/11 None
SNAP00000017423 ENSEMBL cdna:SNAP chromosome:CEL140:II:12569794:12570524:-1 10/11 None
GENEFINDER00000017455 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12570099:12570524:-1 11/11 None
Y38E10A.1 ENSEMBL cdna:known chromosome:CEL140:II:12570099:12570524:-1 gene:Y38E10A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12570095-12570521(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.1
Entrez Gene 189652 Entrez gene
SwissProt Q9NAK9 EMBL-EBI
WormBase CE21581 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54392 Hypothetical protein Y38E10A.1 [Caenorhabditis elegans] ref|NP_496684.1| Y38E10A.1 [Caenorhabditis elegans] 3.0E-43
blast CAB54392 Hypothetical protein Y38E10A.1 [Caenorhabditis elegans] ref|NP_496684.1| Y38E10A.1 [Caenorhabditis elegans] 3.0E-34
blast NP_508643 T14G12.1 [Caenorhabditis elegans] gb|AAA82435.1| Hypothetical protein T14G12.1 [Caenorhabditis elegans] 2.0E-28
blast T26169 hypothetical protein W04G5.1 - Caenorhabditis elegans 2.0E-28
Protein Domains
Database ID Description E-Value
scop a.4.1.Paired domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Paired domain 4.5
Pfam IPR001523 EMBL-EBI Paired box protein, N-terminal 3.9E-4
Sequence
Target Sequence 
>C. ELEGANS:185362_AT
gtcacttacttccattgccgaagcaaattatttttcatccgacccgtttcagttctcaac
tagttgtgatcctaatctcgaaaccaccacaacggaagtggctgaaacctctactactcc
ctaccacccaatggcatgggatttcaaagatttcactcatagtttaacccaagaacaatc
gttcaacgaacttatgtatctcactacaaacggactggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACTTACTTCCATTGCCGAAGCA 496 463 36 Antisense
AGCAAATTATTTTTCATCCGACCCG 236 75 57 Antisense
ACCCGTTTCAGTTCTCAACTAGTTG 529 89 77 Antisense
GTGATCCTAATCTCGAAACCACCAC 155 483 101 Antisense
GAAACCACCACAACGGAAGTGGCTG 456 349 115 Antisense
GAAGTGGCTGAAACCTCTACTACTC 557 335 130 Antisense
CTCCCTACCACCCAATGGCATGGGA 30 233 152 Antisense
GATTTCACTCATAGTTTAACCCAAG 236 429 184 Antisense
TAACCCAAGAACAATCGTTCAACGA 143 639 200 Antisense
GTTCAACGAACTTATGTATCTCACT 374 445 216 Antisense
GTATCTCACTACAAACGGACTGGCG 296 455 231 Antisense
Sequence Source Affymetrix Proprietary Database