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[185361_at]

Description C17G10.7 /REP_DB=WormBase Gene ID /WP=CE01791 /TR=Q09978 /GB=AAB93454.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 72      6grp_total > 94      4grp_total > 06      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 560
1 2 3 4 range
A 542.6
(0.1)
P 		260.9
(-3)
P 		508.4
(-0.2)
P 		800.4
(3)
P 		540
B 646.4
(1.4)
P 		343.3
(-3)
P 		402.8
(-2.1)
P 		753.2
(3)
P 		410
C 565.3
(-1.1)
P 		443.8
(-3)
P 		495.1
(-2.2)
P 		820.7
(3)
P 		377
avr 584.8
(0.2) 		349.3
(-3) 		468.8
(-1.4) 		791.4
(3) 		442

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 305.3
(-2.3)
P 		269
(-3)
P 		314
(-2.1)
P 		362.6
(-1.1)
P 		569.8
(3)
P 		336
(-1.7)
P 		301
B 292
(-3)
P 		344.4
(-2)
P 		360.9
(-1.7)
P 		397.8
(-1)
P 		611.7
(3)
P 		511.6
(1.1)
P 		320
C 328.3
(-1.7)
P 		334.5
(-1.5)
P 		275.1
(-3)
P 		516.5
(3)
P 		471.6
(1.9)
P 		475.7
(2)
P 		241
avr 308.5
(-3) 		316
(-2.8) 		316.7
(-2.8) 		425.6
(-0.1) 		551
(3) 		441.1
(0.3) 		243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 197.5
(3)
P 		56.6
(-3)
P 		132.9
(0.2)
P 		117.2
(-0.4)
P 		141
B 206.1
(3)
P 		84.8
(-3)
P 		93.3
(-2.6)
P 		160.5
(0.7)
P 		121
C 187.1
(3)
P 		127.6
(-3)
P 		172.5
(1.5)
P 		138.4
(-1.9)
P 		60
avr 196.9
(3) 		89.7
(-3) 		132.9
(-0.6) 		138.7
(-0.3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 56.3
(-3)
P 		95.7
(-1)
P 		68.4
(-2.4)
P 		92
(-1.1)
P 		171.9
(3)
P 		81.8
(-1.7)
P 		116
B 101.6
(-2.5)
P 		114.6
(-2)
P 		87.6
(-3)
P 		105.4
(-2.3)
P 		248.5
(3)
P 		190.8
(0.8)
P 		161
C 121.7
(0.5)
P 		102.1
(-0.8)
P 		70
(-3)
P 		103.9
(-0.7)
P 		152.6
(2.5)
P 		159.3
(3)
P 		89
avr 93.2
(-2.1) 		104.1
(-1.5) 		75.3
(-3) 		100.4
(-1.7) 		191
(3) 		144
(0.6) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185361_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4630
Sequence Type Exemplar sequence
Representative Public ID C17G10.7 NCBI
Target Description C17G10.7 /REP_DB=WormBase Gene ID /WP=CE01791 /TR=Q09978 /GB=AAB93454.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062689(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062689 NCBI Caenorhabditis elegans C17G10.7 (C17G10.7) mRNA, complete cds. 11/11 None
SNAP00000029027 ENSEMBL cdna:SNAP chromosome:CEL140:II:5606764:5607793:-1 11/11 None
GENEFINDER00000029036 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5606764:5607793:-1 11/11 None
C17G10.7 ENSEMBL cdna:known chromosome:CEL140:II:5606764:5607793:-1 gene:C17G10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5606761-5607791(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17G10.7
Entrez Gene 173949 Entrez gene
SwissProt Q09978 EMBL-EBI
WormBase CE01791 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93454 Hypothetical protein C17G10.7 [Caenorhabditis elegans] ref|NP_495090.1| C17G10.7 [Caenorhabditis elegans] 1.0E-110
blast CAE59151 Hypothetical protein CBG02456 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495090.1 4 19-41,51-70,77-99,109-131
C17G10.7 4 19-41,51-70,77-99,109-131
SNAP00000029027 4 19-41,51-70,77-99,109-131
GENEFINDER00000029036 4 19-41,51-70,77-99,109-131
Sequence
Target Sequence 
>C. ELEGANS:185361_AT
ttggctccgcagtcgtaggaagctcttccagagtagaatgtgtttattgatgctggtcat
gatcaatttcgtaaatagtgttattttaacgttggagatttgtggagaggattcaaatat
gacacttcttatgttcttcgtgaatacatttgtcgtatttctttcaatgtacggactata
caatttccgtcccgtattcctatctccaaatgtgctcctcaaaataattctctcatcatc
tgcacttttctacggtctccagatggctgaaactacctcgaactctgcaatttttgtgtg
gttaaccatctcgattgttttcttcattttggaaattcatactatgttttcgacgacatt
tgatatcatcaaacaactcaatttaagagcctacagtaaaccaccaccaaattataatca
agttatgtcgatagacgtacctccaccatcctacgaagaagctctcgtacggctggaaca
gaatcgaacggctgctaaaaatcagagctctccaaaaccagatcaacctgctcaattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGCTCCGCAGTCGTAGGAAGCTC 677 707 45 Antisense
GATGCTGGTCATGATCAATTTCGTA 132 415 93 Antisense
CGTATTCCTATCTCCAAATGTGCTC 392 247 237 Antisense
GTGCTCCTCAAAATAATTCTCTCAT 427 479 256 Antisense
TTTCTACGGTCTCCAGATGGCTGAA 109 671 291 Antisense
AAACTACCTCGAACTCTGCAATTTT 560 127 314 Antisense
ACCATCTCGATTGTTTTCTTCATTT 210 87 349 Antisense
TAAGAGCCTACAGTAAACCACCACC 446 637 428 Antisense
TATGTCGATAGACGTACCTCCACCA 509 655 468 Antisense
CGAAGAAGCTCTCGTACGGCTGGAA 523 253 498 Antisense
AAACCAGATCAACCTGCTCAATTGA 590 125 559 Antisense
Sequence Source Affymetrix Proprietary Database