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[185360_at]

Description F54D11.3 /REP_DB=WormBase Gene ID /WP=CE11072 /TR=Q22994 /GB=AAB04825.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 52.9
(-0.2)
A 		42.4
(-0.9)
A 		12.1
(-3)
A 		100.3
(3)
A 		88
B 35.1
(3)
A 		14.4
(-1.4)
A 		6.7
(-3)
A 		30.9
(2.1)
A 		28
C 47.6
(3)
A 		23.1
(-3)
A 		23.5
(-2.9)
A 		37.5
(0.5)
A 		25
avr 45.2
(1.4) 		26.6
(-1.2) 		14.1
(-3) 		56.2
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 54.7
(2.8)
A 		21.9
(-1)
A 		5
(-3)
A 		45.3
(1.7)
A 		56.7
(3)
A 		5.1
(-3)
A 		52
B 30.6
(-0.5)
A 		19.1
(-2)
A 		57.9
(3)
A 		11
(-3)
A 		21.8
(-1.6)
A 		30.3
(-0.5)
A 		47
C 27.6
(0.6)
A 		42.3
(3)
A 		9.7
(-2.3)
A 		5.1
(-3)
A 		8.6
(-2.4)
A 		27.5
(0.6)
A 		37
avr 37.6
(3) 		27.8
(-0.4) 		24.2
(-1.7) 		20.5
(-3) 		29
(-0) 		21
(-2.8) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.3
(3)
A 		9.2
(-0.8)
A 		3.2
(-3)
A 		14.7
(1.3)
A 		16
B 11.2
(3)
A 		3.6
(-1.8)
A 		1.6
(-3)
A 		6.6
(0.1)
A 		10
C 15.8
(3)
A 		6.6
(-2.8)
A 		8.2
(-1.8)
A 		6.3
(-3)
A 		10
avr 15.4
(3) 		6.5
(-1.8) 		4.3
(-3) 		9.2
(-0.4) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 10.1
(0.4)
A 		7.8
(-0.5)
A 		1.1
(-3)
A 		11.5
(0.9)
A 		17.1
(3)
A 		1.2
(-3)
A 		16
B 10.7
(1.2)
A 		6.4
(-1.1)
A 		14.1
(3)
A 		2.9
(-3)
A 		8.9
(0.2)
A 		11.3
(1.5)
A 		11
C 10.2
(1.6)
A 		12.9
(3)
A 		2.5
(-2.2)
A 		1
(-3)
A 		2.8
(-2.1)
A 		9.2
(1.1)
A 		12
avr 10.3
(3) 		9
(1.5) 		5.9
(-2.1) 		5.1
(-3) 		9.6
(2.2) 		7.2
(-0.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185360_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15225
Sequence Type Exemplar sequence
Representative Public ID F54D11.3 NCBI
Target Description F54D11.3 /REP_DB=WormBase Gene ID /WP=CE11072 /TR=Q22994 /GB=AAB04825.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071848(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071848 NCBI Caenorhabditis elegans F54D11.3 (F54D11.3) mRNA, complete cds. 10/11 None
SNAP00000035034 ENSEMBL cdna:SNAP chromosome:CEL140:V:4635318:4636828:-1 10/11 None
GENEFINDER00000035037 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4635318:4636828:-1 11/11 None
F54D11.3 ENSEMBL cdna:known chromosome:CEL140:V:4635342:4636828:-1 gene:F54D11.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4635317-4636828(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54D11.3
Entrez Gene 186237 Entrez gene
SwissProt Q22994 EMBL-EBI
WormBase CE35325 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04825 Hypothetical protein F54D11.3 [Caenorhabditis elegans] ref|NP_504249.2| F54D11.3 [Caenorhabditis elegans] 1.0E-137
blast AAB04825 Hypothetical protein F54D11.3 [Caenorhabditis elegans] ref|NP_504249.2| F54D11.3 [Caenorhabditis elegans] 1.0E-135
blast AAB04825 Hypothetical protein F54D11.3 [Caenorhabditis elegans] ref|NP_504249.2| F54D11.3 [Caenorhabditis elegans] 1.0E-111
blast CAB02964 Hypothetical protein F16B12.6 [Caenorhabditis elegans] ref|NP_510349.2| F16B12.6 [Caenorhabditis elegans] 6.0E-55
blast CAB02964 Hypothetical protein F16B12.6 [Caenorhabditis elegans] ref|NP_510349.2| F16B12.6 [Caenorhabditis elegans] 2.0E-40
blast CAB02964 Hypothetical protein F16B12.6 [Caenorhabditis elegans] ref|NP_510349.2| F16B12.6 [Caenorhabditis elegans] 2.0E-32
blast AAF39930 Hypothetical protein K09D9.12 [Caenorhabditis elegans] ref|NP_504116.1| K09D9.12 [Caenorhabditis elegans] 8.0E-23
Sequence
Target Sequence 
>C. ELEGANS:185360_AT
ttcttgacaccgataggcttgctctatgggaagacactgcggcaacaaaggatgtgcgga
tgtcagaagagactcggcttcgattcgatcaaaacaatcatcttcaagtatccaaggcga
agctagctttggatcacaatggttttacattgtacgagaacactgctactttggcccgct
gtagacggcataacaaaaaagtcgtttacgtgctacgaaatggtcaccaatatggacatg
gcttgatcatgtatcagtacgtaaaaccaggagcacatccagatccacttcatcaaactg
tgcaactgatgacagatgcgtggtttgatatactgccaccagacatccgaatgactgctt
ctggaatcgtttgtggttcacatcaaatggagactattttgcagtttgcacaaaaacagt
ttggagtgatttgcatcgagcaagcatttgacaatttggttcgggaaatggccggggtga
atgagaatcgacttcttcaaataatctatgaaacagatgttgatgtagaaaaagagcacg
ttgagctggatcaagataatgtggaacacgagaaaccgggtggtcatgaggagctcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTGACACCGATAGGCTTGCTCT 294 689 242 Antisense
GGCTTGCTCTATGGGAAGACACTGC 185 537 257 Antisense
AGAGACTCGGCTTCGATTCGATCAA 195 69 309 Antisense
TACGAGAACACTGCTACTTTGGCCC 177 647 394 Antisense
TACTTTGGCCCGCTGTAGACGGCAT 406 321 408 Antisense
AAACCAGGAGCACATCCAGATCCAC 558 125 505 Antisense
GATCCACTTCATCAAACTGTGCAAC 653 413 523 Antisense
TGATATACTGCCACCAGACATCCGA 293 565 567 Antisense
GACATCCGAATGACTGCTTCTGGAA 532 369 583 Antisense
GCTTCTGGAATCGTTTGTGGTTCAC 560 305 598 Antisense
AACCGGGTGGTCATGAGGAGCTCAT 14 147 815 Antisense
Sequence Source Affymetrix Proprietary Database