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[185358_at]

Description Y39A3A.2 /REP_DB=WormBase Gene ID /WP=CE21639 /TR=Q9N522 /GB=AAF60508.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 16.3
(-1.4)
A 		10.8
(-2.2)
A 		5.4
(-3)
A 		46.6
(3)
A 		41
B 3.7
(-3)
A 		6.9
(-2.2)
A 		3.9
(-2.9)
A 		27.4
(3)
A 		24
C 9
(-2.4)
A 		3.7
(-3)
A 		26.9
(-0.4)
A 		56.5
(3)
A 		53
avr 9.7
(-2.6) 		7.1
(-3) 		12.1
(-2.2) 		43.5
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 1.8
(-3)
A 		13.4
(-0.9)
A 		34.9
(3)
A 		7.8
(-1.9)
A 		2.5
(-2.9)
A 		23
(0.8)
A 		33
B 28.8
(3)
A 		21.2
(1.3)
A 		22.2
(1.6)
A 		2
(-2.8)
A 		4.8
(-2.2)
A 		1.3
(-3)
A 		28
C 26.1
(3)
A 		7.6
(-1.7)
A 		11
(-0.9)
A 		7.4
(-1.8)
A 		17.9
(0.9)
A 		2.6
(-3)
A 		24
avr 18.9
(1.7) 		14.1
(-0) 		22.7
(3) 		5.7
(-3) 		8.4
(-2) 		9
(-1.8) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.9
(2)
A 		2.4
(-1.9)
A 		1.4
(-3)
A 		6.8
(3)
A 		5
B 1.2
(-2.6)
A 		1.7
(-2)
A 		0.9
(-3)
A 		5.8
(3)
A 		5
C 3
(-1.6)
A 		1.1
(-3)
A 		9.4
(2.9)
A 		9.5
(3)
A 		8
avr 3.4
(-1.2) 		1.7
(-3) 		3.9
(-0.7) 		7.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.3
(-3)
A 		4.8
(0.7)
A 		7.6
(3)
A 		2
(-1.6)
A 		0.7
(-2.7)
A 		5.6
(1.4)
A 		7
B 10
(3)
A 		7
(1.1)
A 		5.4
(0.1)
A 		0.5
(-3)
A 		2
(-2.1)
A 		0.5
(-3)
A 		10
C 9.7
(3)
A 		2.3
(-2)
A 		2.8
(-1.7)
A 		1.5
(-2.6)
A 		5.8
(0.3)
A 		0.9
(-3)
A 		9
avr 6.7
(3) 		4.7
(0.8) 		5.3
(1.4) 		1.3
(-3) 		2.8
(-1.3) 		2.3
(-1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185358_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8254
Sequence Type Exemplar sequence
Representative Public ID Y39A3A.2 NCBI
Target Description Y39A3A.2 /REP_DB=WormBase Gene ID /WP=CE21639 /TR=Q9N522 /GB=AAF60508.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065094(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065094 NCBI Caenorhabditis elegans Y39A3A.2 (Y39A3A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000001103 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2056718:2058035:-1 11/11 None
Y39A3A.2 ENSEMBL cdna:known chromosome:CEL140:III:2056718:2057658:-1 gene:Y39A3A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2056717-2057658(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A3A.2
Entrez Gene 189718 Entrez gene
SwissProt Q9N522 EMBL-EBI
WormBase CE21639 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60508 Hypothetical protein Y39A3A.2 [Caenorhabditis elegans] ref|NP_497495.1| Y39A3A.2 [Caenorhabditis elegans] 1.0E-156
blast AAF60508 Hypothetical protein Y39A3A.2 [Caenorhabditis elegans] ref|NP_497495.1| Y39A3A.2 [Caenorhabditis elegans] 1.0E-141
blast CAA16375 Hypothetical protein Y44A6B.3 [Caenorhabditis elegans] ref|NP_507987.1| Y44A6B.3 [Caenorhabditis elegans] 2.0E-57
blast CAA16375 Hypothetical protein Y44A6B.3 [Caenorhabditis elegans] ref|NP_507987.1| Y44A6B.3 [Caenorhabditis elegans] 1.0E-51
blast CAB00094 Hypothetical protein F29D10.3 [Caenorhabditis elegans] ref|NP_492392.2| F29D10.3 [Caenorhabditis elegans] 3.0E-43
blast CAB00094 Hypothetical protein F29D10.3 [Caenorhabditis elegans] ref|NP_492392.2| F29D10.3 [Caenorhabditis elegans] 5.0E-39
Sequence
Target Sequence 
>C. ELEGANS:185358_AT
tcgtctgaatccattgtagcttttaagcgaaacgagacatcggatcagtgtccttttctc
gcttttaacacaacggagttggaatggctcaataatgacgtcatccacaatttgaaattt
tccactgatgacttgtactatcgctttgagttaactcgcagtgtgtgccctaaaaattca
actgtgtttccaagaaccactaagaacggagtattgcatgtttgccttgaagttcgctac
tttcctgatggtgctggtaaatcctacgatgatgctcgagaattgtgcaaggaggataat
ggggtgagcctgactgggccagcacagaattcggagagagaatttgttaaagcatcagtt
cttcaaagaaaagagtttatatttcttgatggacgtgcgctcaatcacaatgaaccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTCTGAATCCATTGTAGCTTTTA 686 599 247 Antisense
ACATCGGATCAGTGTCCTTTTCTCG 196 105 283 Antisense
TCCTTTTCTCGCTTTTAACACAACG 645 589 297 Antisense
GAAATTTTCCACTGATGACTTGTAC 601 363 360 Antisense
GATGACTTGTACTATCGCTTTGAGT 95 413 373 Antisense
AGTTAACTCGCAGTGTGTGCCCTAA 660 63 395 Antisense
TCGCTACTTTCCTGATGGTGCTGGT 540 597 480 Antisense
GATAATGGGGTGAGCCTGACTGGGC 170 419 541 Antisense
GACTGGGCCAGCACAGAATTCGGAG 652 375 558 Antisense
TATATTTCTTGATGGACGTGCGCTC 12 661 624 Antisense
GTGCGCTCAATCACAATGAACCACT 25 479 641 Antisense
Sequence Source Affymetrix Proprietary Database