[Home] | [Total List]

[185356_at]

Description F35D11.2 /REP_DB=WormBase Gene ID /WP=CE02715 /TR=Q20040 /GB=AAA68749.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 03      4grp_high_8_8 > 37      6grp_highest_nonorm > 76      6grp_total > 92      4grp_total > 42      6grp_cgc > 64      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 657
1 2 3 4 range
A 831
(-3)
P 		1444.2
(3)
P 		1440.3
(3)
P 		1106.4
(-0.3)
P 		613
B 893.1
(-3)
P 		1488.4
(3)
P 		1267.1
(0.8)
P 		1253.6
(0.6)
P 		595
C 1020.6
(-3)
P 		1436.5
(3)
P 		1208.7
(-0.3)
P 		1089
(-2)
P 		416
avr 914.9
(-3) 		1456.4
(3) 		1305.4
(1.3) 		1149.7
(-0.4) 		542

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 599
1 2 3 4 5 6 range
A 1212.8
(1.3)
P 		1340.4
(3)
P 		895
(-3)
P 		1173.7
(0.8)
P 		1169
(0.7)
P 		1100.7
(-0.2)
P 		445
B 1011.8
(-0.2)
P 		1303.4
(3)
P 		763.2
(-3)
P 		1219.2
(2.1)
P 		1242.2
(2.3)
P 		867.2
(-1.8)
P 		540
C 902.7
(-3)
P 		1271.6
(1.8)
P 		1030
(-1.3)
P 		1093.8
(-0.5)
P 		1361.9
(3)
P 		1148.4
(0.2)
P 		459
avr 1042.4
(-0.9) 		1305.1
(3) 		896.1
(-3) 		1162.2
(0.9) 		1257.7
(2.3) 		1038.8
(-0.9) 		409
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 302.6
(0.9)
P 		313.5
(1.2)
P 		376.5
(3)
P 		162
(-3)
P 		215
B 284.8
(-1.9)
P 		367.6
(3)
P 		293.6
(-1.4)
P 		267.1
(-3)
P 		101
C 337.9
(0.9)
P 		413
(2.8)
P 		421.3
(3)
P 		183.6
(-3)
P 		238
avr 308.4
(0.9) 		364.7
(3) 		363.8
(3) 		204.2
(-3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 223.6
(-2.4)
P 		476.7
(3)
P 		194.9
(-3)
P 		297.7
(-0.8)
P 		352.7
(0.4)
P 		268
(-1.4)
P 		282
B 352.1
(0.1)
P 		433.8
(1.7)
P 		185.3
(-3)
P 		322.9
(-0.4)
P 		504.7
(3)
P 		323.4
(-0.4)
P 		319
C 334.6
(0.1)
P 		388
(1.6)
P 		262.2
(-1.9)
P 		220
(-3)
P 		440.7
(3)
P 		384.4
(1.5)
P 		221
avr 303.4
(-0.6) 		432.8
(3) 		214.1
(-3) 		280.2
(-1.2) 		432.7
(3) 		325.3
(0.1) 		219
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185356_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4043
Sequence Type Exemplar sequence
Representative Public ID F35D11.2 NCBI
Target Description F35D11.2 /REP_DB=WormBase Gene ID /WP=CE02715 /TR=Q20040 /GB=AAA68749.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182111(11), NM_062416(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182111 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-35) (pqn-35) mRNA, complete cds. 11/11 None
NM_062416 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-35) (pqn-35) mRNA, complete cds. 11/11 None
SNAP00000013544 ENSEMBL cdna:SNAP chromosome:CEL140:II:4623483:4625879:1 11/11 None
GENEFINDER00000013557 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4623483:4625879:1 11/11 None
F35D11.2b ENSEMBL cdna:known chromosome:CEL140:II:4612976:4626081:1 gene:F35D11.2 11/11 None
F35D11.2a.1 ENSEMBL cdna:known chromosome:CEL140:II:4623810:4625879:1 gene:F35D11.2 11/11 None
F35D11.2a.2 ENSEMBL cdna:known chromosome:CEL140:II:4623812:4625879:1 gene:F35D11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4622573-4625878(+) 100.0 100.0
Public Domain and Genome References
Ensembl F35D11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM98023 Prion-like-(q/n-rich)-domain-bearing protein protein 35, isoform b [Caenorhabditis elegans] ref|NP_871911.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-35) [Caenorhabditis elegans] 0.0
blast AAA68749 Prion-like-(q/n-rich)-domain-bearing protein protein 35, isoform a [Caenorhabditis elegans] ref|NP_494817.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-35) [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_871911.1 1 69-91
NP_494817.2 1 61-83
F35D11.2b 1 69-91
F35D11.2a.1 1 61-83
F35D11.2a.2 1 61-83
SNAP00000013544 1 108-130
GENEFINDER00000013557 1 129-151
Sequence
Target Sequence 
>C. ELEGANS:185356_AT
attcccgcaggttccagttggaggacaacaacaattccagcagcagcaggcacagccatg
gtacatgccttataatgagaatcaggcacaagtgaatcagaatcagaaccagaatcaaaa
tcaagatccattcaaacaactgagcaacgtgtggcagcaaaatgatgactggatgattaa
aaatcatgagaatcaaatgcaaaatcaagcgatgccattccaaccgaatccagctgcatc
tcaaaatgccgatttcaatgttccaatggatgtgatttccgacgacgcagtagctccacc
atccacagcaatttctgcagacaaggaaaaagcatgggctccaccagcttcatctgagga
aaacgtcatctccccagatgctagcctcgagccaatcaacgacggaaaattccttccaat
tcgttcggacgataagccaatcgattccgcagacgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCCGCAGGTTCCAGTTGGAGGA 326 9 1359 Antisense
GCAGCAGCAGGCACAGCCATGGTAC 116 313 1398 Antisense
AAAATCAAGCGATGCCATTCCAACC 368 133 1559 Antisense
ACCGAATCCAGCTGCATCTCAAAAT 590 89 1581 Antisense
TGTGATTTCCGACGACGCAGTAGCT 177 551 1629 Antisense
TCCACCATCCACAGCAATTTCTGCA 366 589 1653 Antisense
GAAAAAGCATGGGCTCCACCAGCTT 621 355 1684 Antisense
TGAGGAAAACGTCATCTCCCCAGAT 676 567 1713 Antisense
TAGCCTCGAGCCAATCAACGACGGA 404 651 1740 Antisense
ATTCCTTCCAATTCGTTCGGACGAT 88 3 1767 Antisense
TAAGCCAATCGATTCCGCAGACGCT 700 637 1791 Antisense
Sequence Source Affymetrix Proprietary Database