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[185355_at]

Description C53C11.1 /REP_DB=WormBase Gene ID /WP=CE04264 /TR=P91186 /GB=AAB42306.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 52.7
(-3)
A 		63.7
(-2.3)
A 		84.5
(-0.9)
A 		145.5
(3)
P 		93
B 91.7
(1.5)
A 		97.6
(3)
A 		81.4
(-1)
A 		73.5
(-3)
A 		24
C 89
(-0.6)
A 		82.3
(-1)
A 		52.4
(-3)
A 		143
(3)
A 		91
avr 77.8
(-2.4) 		81.2
(-1.9) 		72.8
(-3) 		120.7
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 87.8
(2.1)
A 		84.5
(1.7)
A 		95.6
(3)
A 		72.6
(0.3)
A 		79.7
(1.1)
A 		44.4
(-3)
A 		51
B 89.8
(1.6)
A 		103.4
(3)
M 		70.6
(-0.4)
M 		72
(-0.3)
A 		69.6
(-0.5)
A 		45.5
(-3)
A 		58
C 76.8
(-0.9)
A 		109.4
(3)
P 		98.6
(1.7)
A 		58.6
(-3)
A 		72.2
(-1.4)
A 		76.4
(-0.9)
A 		51
avr 84.8
(1) 		99.1
(3) 		88.3
(1.5) 		67.7
(-1.3) 		73.8
(-0.5) 		55.4
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 19.2
(0.9)
A 		13.8
(-3)
A 		22.1
(3)
A 		21.3
(2.4)
P 		8
B 29.2
(3)
A 		24.1
(0.7)
A 		18.9
(-1.6)
A 		15.7
(-3)
A 		14
C 29.4
(3)
A 		23.7
(-0.1)
A 		18.2
(-3)
A 		24.1
(0.2)
A 		11
avr 25.9
(3) 		20.5
(-2.2) 		19.7
(-3) 		20.4
(-2.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 16.2
(-1.3)
A 		30.1
(3)
A 		20.8
(0.1)
A 		18.4
(-0.6)
A 		24.1
(1.1)
A 		10.8
(-3)
A 		19
B 31.2
(1.9)
A 		34.4
(3)
M 		17.1
(-3)
M 		19.1
(-2.3)
A 		28.3
(0.9)
A 		17
(-3)
A 		17
C 28.5
(1.6)
A 		33.4
(3)
P 		25.1
(0.7)
A 		11.8
(-3)
A 		23.4
(0.2)
A 		25.6
(0.8)
A 		22
avr 25.3
(0.3) 		32.6
(3) 		21
(-1.3) 		16.4
(-3) 		25.3
(0.3) 		17.8
(-2.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185355_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17473
Sequence Type Exemplar sequence
Representative Public ID C53C11.1 NCBI
Target Description C53C11.1 /REP_DB=WormBase Gene ID /WP=CE04264 /TR=P91186 /GB=AAB42306.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078411 NCBI Caenorhabditis elegans C53C11.1 (C53C11.1) mRNA, complete cds. 11/11 None
SNAP00000044476 ENSEMBL cdna:SNAP chromosome:CEL140:X:17340695:17342131:1 11/11 None
GENEFINDER00000044479 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17340695:17342131:1 11/11 None
C53C11.1 ENSEMBL cdna:known chromosome:CEL140:X:17339818:17342131:1 gene:C53C11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17339817-17342131(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C53C11.1
Entrez Gene 183754 Entrez gene
SwissProt P91186 EMBL-EBI
WormBase CE04264 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42306 Hypothetical protein C53C11.1 [Caenorhabditis elegans] ref|NP_510812.1| C53C11.1 [Caenorhabditis elegans] 1.0E-141
blast AAB42306 Hypothetical protein C53C11.1 [Caenorhabditis elegans] ref|NP_510812.1| C53C11.1 [Caenorhabditis elegans] 1.0E-116
Sequence
Target Sequence 
>C. ELEGANS:185355_AT
agaagccgactgctccaaattttcaactttccagatgctatcatccaccttcaatggaga
atttggacaagccgctgttcaaacaatactaccgcagagatatgagcatgtacgatgagc
cactgattcctccggcgtgtagattggagtaccctcgtgtgtacctgactccggagcaac
gtcgaatccctggaagatactttactcctgatgatgggtcacttgcttggagatcttgga
cgcaagaacaagttttagaatgggtcagcaaatttttgcctcgcgagccgaaggaggttt
tcattgattttaaaatggacggaagacacttggaacgattttacaaaaaagacatggtgc
tttactactctcttcaaagaaaagacaaaccattcttctccatgattcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCCGACTGCTCCAAATTTTCA 164 73 239 Antisense
TTCCAGATGCTATCATCCACCTTCA 544 699 267 Antisense
GAGAATTTGGACAAGCCGCTGTTCA 559 389 295 Antisense
TGTACGATGAGCCACTGATTCCTCC 310 559 347 Antisense
TGATTCCTCCGGCGTGTAGATTGGA 153 565 362 Antisense
GATTGGAGTACCCTCGTGTGTACCT 296 433 380 Antisense
GCAACGTCGAATCCCTGGAAGATAC 367 315 414 Antisense
TACTCCTGATGATGGGTCACTTGCT 185 647 441 Antisense
TTTTTGCCTCGCGAGCCGAAGGAGG 497 669 511 Antisense
AGACATGGTGCTTTACTACTCTCTT 693 71 588 Antisense
AAACCATTCTTCTCCATGATTCGTT 634 125 625 Antisense
Sequence Source Affymetrix Proprietary Database