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[185354_at]

Description Y106G6G.3 /REP_DB=WormBase Gene ID /WP=CE23213 /TR=Q9XWA8 /GB=CAA22055.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 06      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 18.6
(-1.2)
A 		8
(-2.9)
A 		7.2
(-3)
A 		44.3
(3)
A 		37
B 27
(2)
A 		5.9
(-3)
A 		27.3
(2)
A 		31.4
(3)
A 		26
C 18.4
(-0.2)
A 		4.1
(-3)
A 		4
(-3)
A 		35.4
(3)
A 		31
avr 21.3
(-0) 		6
(-3) 		12.8
(-1.7) 		37
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 4.8
(-3)
A 		38.9
(-0.5)
A 		18
(-2)
A 		31
(-1.1)
A 		56.2
(0.8)
P 		85.9
(3)
A 		81
B 11.6
(-2.7)
A 		26.9
(-1.6)
A 		16.7
(-2.3)
A 		7.5
(-3)
A 		62.8
(1.1)
P 		89.2
(3)
P 		82
C 13.3
(-3)
A 		32.9
(-1.4)
A 		19.6
(-2.5)
A 		30.9
(-1.5)
A 		85.4
(3)
P 		75.6
(2.2)
P 		72
avr 9.9
(-3) 		32.9
(-1.1) 		18.1
(-2.3) 		23.1
(-1.9) 		68.1
(1.7) 		83.6
(3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6.8
(3)
A 		1.7
(-3)
A 		1.9
(-2.8)
A 		6.5
(2.6)
A 		5
B 8.6
(3)
A 		1.4
(-3)
A 		6.3
(1.1)
A 		6.7
(1.4)
A 		7
C 6.1
(3)
A 		1.2
(-3)
A 		1.4
(-2.8)
A 		6
(2.9)
A 		5
avr 7.2
(3) 		1.4
(-3) 		3.2
(-1.1) 		6.4
(2.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 0.9
(-3)
A 		13.8
(0.9)
A 		3.9
(-2.1)
A 		7.9
(-0.9)
A 		17
(1.8)
P 		20.9
(3)
A 		20
B 4
(-2.6)
A 		9
(-1.7)
A 		4.1
(-2.6)
A 		2
(-3)
A 		25.5
(1.5)
P 		33.3
(3)
P 		31
C 4.9
(-3)
A 		10
(-1.7)
A 		5
(-3)
A 		6.2
(-2.7)
A 		27.6
(3)
P 		25.3
(2.4)
P 		23
avr 3.3
(-3) 		10.9
(-1) 		4.3
(-2.7) 		5.4
(-2.5) 		23.4
(2.2) 		26.5
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185354_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1789
Sequence Type Exemplar sequence
Representative Public ID Y106G6G.3 NCBI
Target Description Y106G6G.3 /REP_DB=WormBase Gene ID /WP=CE23213 /TR=Q9XWA8 /GB=CAA22055.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060305(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060305 NCBI Caenorhabditis elegans Y106G6G.3 (Y106G6G.3) mRNA, complete cds. 11/11 None
SNAP00000021078 ENSEMBL cdna:SNAP chromosome:CEL140:I:10331738:10332249:1 11/11 None
GENEFINDER00000021084 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10331738:10332216:1 11/11 None
Y106G6G.3 ENSEMBL cdna:known chromosome:CEL140:I:10331738:10332249:1 gene:Y106G6G.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10331668-10332180(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6G.3
Entrez Gene 190923 Entrez gene
SwissProt Q9XWA8 EMBL-EBI
WormBase CE23213 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22055 Hypothetical protein Y106G6G.3 [Caenorhabditis elegans] ref|NP_492706.1| Y106G6G.3 [Caenorhabditis elegans] 2.0E-59
blast CAA22055 Hypothetical protein Y106G6G.3 [Caenorhabditis elegans] ref|NP_492706.1| Y106G6G.3 [Caenorhabditis elegans] 2.0E-53
blast CAE73791 Hypothetical protein CBG21341 [Caenorhabditis briggsae] 4.0E-33
blast CAE73791 Hypothetical protein CBG21341 [Caenorhabditis briggsae] 1.0E-29
Sequence
Target Sequence 
>C. ELEGANS:185354_AT
gaattcgaatccaagttcatcgccagacgtttcctcgcaaacatccgcgactcaggagga
gccgaaggttaagccacgtcatttggagtcgcgcatcatgtatacggattatgatacaca
atggcagaagaagatcaccaaatgggctcgtgtggcagttcagatggttttcgaaaaagt
tgttgagacggaaaacgagttttatcaggaagttgcggcaagtttcaaagagtcactcaa
atcttcttctggagacgaaaaaccgaaaaaatggcatgtgatcgttggaaatgatttctc
agttcaagcggacgctctcaagggcaccatctcgttttttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCGAATCCAAGTTCATCGCCA 106 325 18 Antisense
AAACATCCGCGACTCAGGAGGAGCC 528 127 56 Antisense
GAGGAGCCGAAGGTTAAGCCACGTC 561 399 73 Antisense
AAGCCACGTCATTTGGAGTCGCGCA 366 149 88 Antisense
GAGTCGCGCATCATGTATACGGATT 243 401 103 Antisense
GAAGATCACCAAATGGGCTCGTGTG 699 337 147 Antisense
GGCTCGTGTGGCAGTTCAGATGGTT 680 539 162 Antisense
GTTGCGGCAAGTTTCAAAGAGTCAC 134 441 229 Antisense
AGAGTCACTCAAATCTTCTTCTGGA 224 69 246 Antisense
TTTCTCAGTTCAAGCGGACGCTCTC 553 669 312 Antisense
TCAAGGGCACCATCTCGTTTTTTGC 345 633 335 Antisense
Sequence Source Affymetrix Proprietary Database