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[185353_at]

Description W10G11.4 /REP_DB=WormBase Gene ID /WP=CE14808 /TR=O44919 /GB=AAG24213.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 34.3
(0.4)
A 		3
(-3)
A 		13.6
(-1.8)
A 		57.6
(3)
A 		55
B 49.3
(0.9)
A 		3.8
(-3)
A 		44.3
(0.4)
A 		74.3
(3)
A 		71
C 6.3
(-2.7)
A 		15.3
(-1.9)
A 		2.4
(-3)
A 		70.7
(3)
A 		68
avr 30
(-0.7) 		7.4
(-3) 		20.1
(-1.7) 		67.5
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 18.8
(-0.6)
A 		40.5
(3)
A 		23.1
(0.1)
A 		34.6
(2)
A 		4.8
(-3)
A 		12.3
(-1.7)
A 		36
B 2.6
(-3)
A 		10.5
(-0.8)
A 		12
(-0.4)
A 		5
(-2.3)
A 		24.1
(3)
A 		23.7
(2.9)
A 		22
C 2.9
(-3)
A 		26.4
(-0.1)
A 		6.6
(-2.5)
A 		51
(3)
A 		25.3
(-0.2)
A 		15.3
(-1.5)
A 		48
avr 8.1
(-3) 		25.8
(1.8) 		13.9
(-1.4) 		30.2
(3) 		18.1
(-0.3) 		17.1
(-0.6) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.5
(3)
A 		0.7
(-3)
A 		3.6
(-1.5)
A 		8.4
(0.9)
A 		12
B 15.7
(3)
A 		0.9
(-3)
A 		10.3
(0.8)
A 		15.8
(3)
A 		15
C 2.1
(-2.3)
A 		4.4
(-1.1)
A 		0.8
(-3)
A 		11.9
(3)
A 		11
avr 10.1
(1.9) 		2
(-3) 		4.9
(-1.3) 		12
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.5
(-2)
A 		14.4
(3)
A 		5
(-1.3)
A 		8.8
(0.4)
A 		1.4
(-3)
A 		3
(-2.3)
A 		13
B 0.9
(-3)
A 		3.5
(-1.2)
A 		2.9
(-1.7)
A 		1.3
(-2.7)
A 		9.8
(3)
A 		8.8
(2.3)
A 		9
C 1.1
(-3)
A 		8
(1.5)
A 		1.7
(-2.6)
A 		10.2
(3)
A 		8.2
(1.7)
A 		5.1
(-0.4)
A 		9
avr 1.8
(-3) 		8.6
(3) 		3.2
(-1.8) 		6.8
(1.4) 		6.5
(1.1) 		5.6
(0.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185353_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5092
Sequence Type Exemplar sequence
Representative Public ID W10G11.4 NCBI
Target Description W10G11.4 /REP_DB=WormBase Gene ID /WP=CE14808 /TR=O44919 /GB=AAG24213.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062176(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062176 NCBI Caenorhabditis elegans W10G11.4 (W10G11.4) mRNA, complete cds. 11/11 None
SNAP00000013259 ENSEMBL cdna:SNAP chromosome:CEL140:II:3562897:3563354:-1 9/11 None
W10G11.4 ENSEMBL cdna:known chromosome:CEL140:II:3562754:3563354:-1 gene:W10G11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3562752-3563353(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10G11.4
Entrez Gene 189337 Entrez gene
SwissProt O44919 EMBL-EBI
WormBase CE14808 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24213 Hypothetical protein W10G11.4 [Caenorhabditis elegans] ref|NP_494577.1| W10G11.4 [Caenorhabditis elegans] 4.0E-91
blast AAG24213 Hypothetical protein W10G11.4 [Caenorhabditis elegans] ref|NP_494577.1| W10G11.4 [Caenorhabditis elegans] 1.0E-50
blast AAG24212 Hypothetical protein W10G11.3 [Caenorhabditis elegans] ref|NP_494576.1| W10G11.3 [Caenorhabditis elegans] 3.0E-46
blast C88104 protein W10G11.1 [imported] - Caenorhabditis elegans 2.0E-42
blast C88104 protein W10G11.1 [imported] - Caenorhabditis elegans 3.0E-42
blast AAG24212 Hypothetical protein W10G11.3 [Caenorhabditis elegans] ref|NP_494576.1| W10G11.3 [Caenorhabditis elegans] 1.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 7.9E-32
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 3.7E-15
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 3.1E-18
Sequence
Target Sequence 
>C. ELEGANS:185353_AT
ttgtggcggagacgtgtgaagctttagattgtacaaaacctgaaggcccagaagctacaa
aatgcttggagattttcgacgaacttggtgaagccgcgaacgggcttgatatttccaaca
agacaagaaccacaaaaatgctcgaaaactgtgaaaagttcagccgttgccgccacacac
tcggttgtcgaaccgacggccttttcgtcggcgttgccaacgcagctcttatgttctgcg
agtatagcttccgagtgcacgaagaactggaatcccttcccgataggattccggataagg
tgaagatggcggaaattcggaaagagtcatgtgataatatattcgggaaagacaattgca
tagaaaaggaaatcagagagacctgcggagcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTGGCGGAGACGTGTGAAGCTTT 516 701 53 Antisense
AAAACCTGAAGGCCCAGAAGCTACA 265 131 87 Antisense
ATGCTTGGAGATTTTCGACGAACTT 412 41 114 Antisense
CCGCGAACGGGCTTGATATTTCCAA 275 261 146 Antisense
CTGTGAAAAGTTCAGCCGTTGCCGC 234 241 201 Antisense
CACTCGGTTGTCGAACCGACGGCCT 646 95 230 Antisense
TTTCGTCGGCGTTGCCAACGCAGCT 360 667 255 Antisense
AGCTCTTATGTTCTGCGAGTATAGC 556 79 276 Antisense
GCGAGTATAGCTTCCGAGTGCACGA 278 289 290 Antisense
ATCCCTTCCCGATAGGATTCCGGAT 6 11 324 Antisense
GAAATCAGAGAGACCTGCGGAGCAG 180 363 421 Antisense
Sequence Source Affymetrix Proprietary Database