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[185352_at]

Description T15B7.12 /REP_DB=WormBase Gene ID /WP=CE13668 /TR=O17030 /GB=AAB69965.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 79.9
(-0.8)
A 		37.6
(-2.2)
A 		11.5
(-3)
A 		200.7
(3)
P 		189
B 39.6
(-2)
A 		73.8
(-0.3)
A 		19.5
(-3)
A 		139
(3)
P 		120
C 87
(-1.6)
P 		28.1
(-3)
A 		37.4
(-2.8)
A 		272.4
(3)
P 		244
avr 68.8
(-1.5) 		46.5
(-2.2) 		22.8
(-3) 		204
(3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 69
(3)
P 		66.9
(2.8)
A 		48.8
(0.7)
M 		16.7
(-3)
A 		19
(-2.7)
A 		29.5
(-1.5)
A 		52
B 54.4
(3)
A 		48.3
(1.9)
A 		46.9
(1.7)
A 		20.5
(-3)
A 		54.5
(3)
A 		42.1
(0.8)
P 		34
C 55
(0)
P 		78.7
(1.9)
P 		15.8
(-3)
A 		93.4
(3)
A 		30.6
(-1.9)
A 		20.2
(-2.7)
A 		78
avr 59.5
(2.1) 		64.6
(3) 		37.2
(-1.8) 		43.5
(-0.7) 		34.7
(-2.3) 		30.6
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 29.1
(2.9)
A 		8.2
(-1.8)
A 		3
(-3)
A 		29.4
(3)
P 		26
B 12.6
(-1.1)
A 		18.2
(0.3)
A 		4.5
(-3)
A 		29.6
(3)
P 		25
C 28.8
(0.3)
P 		8.1
(-3)
A 		13
(-2.2)
A 		45.9
(3)
P 		38
avr 23.5
(0.6) 		11.5
(-2) 		6.8
(-3) 		35
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 12.7
(-0.4)
P 		23.8
(3)
A 		10.6
(-1)
M 		4.2
(-3)
A 		5.7
(-2.5)
A 		7.2
(-2.1)
A 		20
B 18.9
(1.8)
A 		16.1
(0.8)
A 		11.4
(-0.9)
A 		5.4
(-3)
A 		22.2
(3)
A 		15.7
(0.7)
P 		17
C 20.4
(1.9)
P 		24
(3)
P 		4
(-3)
A 		18.8
(1.4)
A 		9.9
(-1.2)
A 		6.8
(-2.2)
A 		20
avr 17.3
(1.1) 		21.3
(3) 		8.7
(-3) 		9.5
(-2.6) 		12.6
(-1.1) 		9.9
(-2.4) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185352_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11607
Sequence Type Exemplar sequence
Representative Public ID T15B7.12 NCBI
Target Description T15B7.12 /REP_DB=WormBase Gene ID /WP=CE13668 /TR=O17030 /GB=AAB69965.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072329(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072329 NCBI Caenorhabditis elegans T15B7.12 (T15B7.12) mRNA, complete cds. 11/11 None
GENEFINDER00000035397 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6820484:6822506:-1 11/11 None
T15B7.12 ENSEMBL cdna:known chromosome:CEL140:V:6820484:6822506:-1 gene:T15B7.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035385 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6820484-6822507(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15B7.12
Entrez Gene 188522 Entrez gene
SwissProt O17030 EMBL-EBI
WormBase CE13668 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69965 Hypothetical protein T15B7.12 [Caenorhabditis elegans] ref|NP_504730.1| T15B7.12 [Caenorhabditis elegans] 1.0E-180
blast CAE71956 Hypothetical protein CBG19025 [Caenorhabditis briggsae] 1.0E-148
blast AAB69965 Hypothetical protein T15B7.12 [Caenorhabditis elegans] ref|NP_504730.1| T15B7.12 [Caenorhabditis elegans] 1.0E-145
blast AAC26913 Hypothetical protein H34P18.1 [Caenorhabditis elegans] ref|NP_504726.1| H34P18.1 [Caenorhabditis elegans] 1.0E-140
blast CAE71956 Hypothetical protein CBG19025 [Caenorhabditis briggsae] 1.0E-118
blast AAC26913 Hypothetical protein H34P18.1 [Caenorhabditis elegans] ref|NP_504726.1| H34P18.1 [Caenorhabditis elegans] 1.0E-110
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504730.1 7 44-66,73-95,115-137,158-180,212-234,268-290,300-322
T15B7.12 7 44-66,73-95,115-137,158-180,212-234,268-290,300-322
GENEFINDER00000035397 6 41-61,76-98,111-133,165-187,221-243,253-275
Sequence
Target Sequence 
>C. ELEGANS:185352_AT
ttttcctaattgccacctttgtgcttttcataaacgccgtaaaaaacaccgaggaagaag
gcatttatttggatatttctgatttatcgctgctcagtgagtgcttgttcatgaaagctt
ctctcatggctagtgggctttgttttaagattgctccgtgtcttctaatgctggtattgt
cgctgttccttctgagacgaattgacgagggaaaacaaagtgcgcagaatgcagcggcaa
atcagaaaggaaaaaaagataaaatcgaccgctcatctagattcatacaatttgttctag
tcgtatttctaatcactgagtcaccacaaggagttttcagcattcttggtggctttatga
tattagattacataaactattttcaaaatctatcaatttttatgaatattttggcatttt
tcaacactactacaagttttatcatttatagctcgttatcggcaaaatttagaagaattt
tcgctcaactttttctaccaagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCCTAATTGCCACCTTTGTGCT 359 675 521 Antisense
CCTTTGTGCTTTTCATAAACGCCGT 392 269 536 Antisense
ATCGCTGCTCAGTGAGTGCTTGTTC 196 37 606 Antisense
AAGCTTCTCTCATGGCTAGTGGGCT 58 149 635 Antisense
GCTCCGTGTCTTCTAATGCTGGTAT 413 299 673 Antisense
AATGCTGGTATTGTCGCTGTTCCTT 432 165 687 Antisense
GTCGCTGTTCCTTCTGAGACGAATT 233 475 699 Antisense
CGACCGCTCATCTAGATTCATACAA 399 251 786 Antisense
GTCGTATTTCTAATCACTGAGTCAC 225 473 820 Antisense
AGGAGTTTTCAGCATTCTTGGTGGC 697 55 849 Antisense
TTCGCTCAACTTTTTCTACCAAGCC 303 695 1000 Antisense
Sequence Source Affymetrix Proprietary Database