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[185351_at]

Description C40A11.7 /REP_DB=WormBase Gene ID /WP=CE19370 /TR=Q9TZA6 /GB=AAC68762.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 1.5
(-3)
A 		5.4
(-2.2)
A 		2.5
(-2.8)
A 		31.6
(3)
A 		30
B 8.3
(-3)
A 		9.6
(-2.6)
A 		27.3
(2.2)
A 		30.2
(3)
A 		22
C 20.6
(-0.2)
A 		18.3
(-0.5)
A 		1.4
(-3)
A 		42.4
(3)
A 		41
avr 10.1
(-3) 		11.1
(-2.8) 		10.4
(-2.9) 		34.7
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 2.9
(-3)
A 		3.3
(-2.9)
A 		5.2
(-2.6)
A 		40.2
(3)
A 		23.4
(0.3)
A 		13.9
(-1.2)
A 		37
B 5.5
(-2.7)
A 		3.4
(-3)
A 		10.5
(-2.1)
A 		52
(3)
P 		11.2
(-2)
A 		34.2
(0.8)
P 		49
C 12
(-0.8)
A 		6.8
(-2.1)
A 		27.2
(3)
A 		3.1
(-3)
A 		14.5
(-0.2)
A 		10.7
(-1.1)
A 		24
avr 6.8
(-2.5) 		4.5
(-3) 		14.3
(-0.8) 		31.8
(3) 		16.4
(-0.4) 		19.6
(0.3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.5
(-3)
A 		1.2
(-2)
A 		0.6
(-2.9)
A 		4.6
(3)
A 		4
B 2.6
(-2.7)
A 		2.4
(-3)
A 		6.3
(2.9)
A 		6.4
(3)
A 		4
C 6.8
(2.7)
A 		5.3
(1.4)
A 		0.5
(-3)
A 		7.1
(3)
A 		7
avr 3.3
(-1.6) 		3
(-2.1) 		2.5
(-3) 		6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.2
(-2.6)
A 		1.1
(-2.6)
A 		10.2
(3)
A 		7.1
(1.1)
A 		3.4
(-1.2)
A 		10
B 1.9
(-2.6)
A 		1.1
(-3)
A 		2.6
(-2.3)
A 		13.8
(3)
P 		4.6
(-1.3)
A 		12.7
(2.5)
P 		13
C 4.5
(0.7)
A 		2.1
(-1.6)
A 		6.9
(3)
A 		0.6
(-3)
A 		4.7
(0.9)
A 		3.6
(-0.1)
A 		6
avr 2.3
(-2.3) 		1.5
(-3) 		3.5
(-1.2) 		8.2
(3) 		5.5
(0.6) 		6.6
(1.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185351_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4175
Sequence Type Exemplar sequence
Representative Public ID C40A11.7 NCBI
Target Description C40A11.7 /REP_DB=WormBase Gene ID /WP=CE19370 /TR=Q9TZA6 /GB=AAC68762.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061798(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061798 NCBI Caenorhabditis elegans C40A11.7 (C40A11.7) mRNA, complete cds. 11/11 A 
SNAP00000005080 ENSEMBL cdna:SNAP chromosome:CEL140:II:2146107:2150311:-1 11/11 None
GENEFINDER00000005092 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2148807:2152226:-1 10/11 None
C40A11.7 ENSEMBL cdna:known chromosome:CEL140:II:2148807:2150311:-1 gene:C40A11.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2148805-2150310(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C40A11.7
Entrez Gene 183355 Entrez gene
SwissProt Q9TZA6 EMBL-EBI
WormBase CE19370 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68762 Hypothetical protein C40A11.7 [Caenorhabditis elegans] ref|NP_494199.1| C40A11.7 [Caenorhabditis elegans] 1.0E-118
blast AAC68762 Hypothetical protein C40A11.7 [Caenorhabditis elegans] ref|NP_494199.1| C40A11.7 [Caenorhabditis elegans] 1.0E-114
blast AAC68762 Hypothetical protein C40A11.7 [Caenorhabditis elegans] ref|NP_494199.1| C40A11.7 [Caenorhabditis elegans] 2.0E-93
blast AAC68757 Hypothetical protein C40A11.6 [Caenorhabditis elegans] ref|NP_494197.1| C40A11.6 [Caenorhabditis elegans] 5.0E-85
blast AAC68757 Hypothetical protein C40A11.6 [Caenorhabditis elegans] ref|NP_494197.1| C40A11.6 [Caenorhabditis elegans] 4.0E-83
blast AAC68757 Hypothetical protein C40A11.6 [Caenorhabditis elegans] ref|NP_494197.1| C40A11.6 [Caenorhabditis elegans] 2.0E-61
blast AAC68763 Hypothetical protein C40A11.8 [Caenorhabditis elegans] ref|NP_494200.3| C40A11.8 [Caenorhabditis elegans] 9.0E-47
blast AAB66084 Hypothetical protein B0281.5 [Caenorhabditis elegans] ref|NP_494230.1| B0281.5 [Caenorhabditis elegans] 9.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.4E-43
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 4.0E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000005092 3 49-67,93-115,132-154
Sequence
Target Sequence 
>C. ELEGANS:185351_AT
tagtcgagacgaatattccggttaaaaaggacacttccgattgttatttcattgatcgct
ctccaaagtactttgaaactgtgctaaactacatgagatccggtgttacagtacttccag
actctgaaaaagaactacaagaactgaaaaaagaagccgaattctacttgttggagcagt
tggtagacttgtgtgaacctataaataatcaaatccgaacttatcgctcgtctcatgaat
tgctgcaaatcatcgccagcaccaagaagccagtagttgtgattaactacataacccata
ataacgatatcatatacatcccagaaggatttcgattcgatgagtttgttaagaaaaaca
gttcagtggtagaaatctattttcaaccaatggataatcgagaacctctgccaaaagatt
taaggagacatcgcggaatgaaatattaccctgaaccagtttggagttatcgcatctaca
acagtacgcattcaggttgcgttgatttaacagctatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTCGAGACGAATATTCCGGTTAA 455 651 113 Antisense
CAAATCCGAACTTATCGCTCGTCTC 491 193 322 Antisense
GCCAGCACCAAGAAGCCAGTAGTTG 88 279 367 Antisense
GTTGTGATTAACTACATAACCCATA 646 435 388 Antisense
AACGATATCATATACATCCCAGAAG 404 145 415 Antisense
ATCCCAGAAGGATTTCGATTCGATG 425 37 430 Antisense
GGATAATCGAGAACCTCTGCCAAAA 710 509 504 Antisense
CATCGCGGAATGAAATATTACCCTG 399 211 541 Antisense
TATTACCCTGAACCAGTTTGGAGTT 439 607 556 Antisense
ATCGCATCTACAACAGTACGCATTC 420 35 581 Antisense
GGTTGCGTTGATTTAACAGCTATGG 64 509 607 Antisense
Sequence Source Affymetrix Proprietary Database