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[185349_at]

Description F22E5.14 /REP_DB=WormBase Gene ID /WP=CE09566 /TR=O16712 /GB=AAB66177.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 19      6grp_cgc > 96      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 9.8
(-2.1)
A 		4.9
(-3)
A 		5.7
(-2.9)
A 		38.3
(3)
A 		33
B 4.6
(-2.8)
A 		27.9
(3)
A 		3.7
(-3)
A 		7.2
(-2.1)
A 		24
C 13.4
(2.8)
A 		1.9
(-3)
A 		3.8
(-2)
A 		13.7
(3)
A 		12
avr 9.3
(-1.1) 		11.6
(-0.2) 		4.4
(-3) 		19.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.5
(-2.7)
A 		2.9
(-2.9)
A 		3.1
(-2.8)
A 		24.1
(3)
A 		10.5
(-0.8)
A 		2.5
(-3)
A 		22
B 4.1
(-1.6)
A 		9.9
(3)
A 		2.7
(-2.7)
A 		7.9
(1.4)
A 		2.3
(-3)
A 		4.7
(-1.1)
A 		8
C 2.6
(-3)
A 		4.4
(1.9)
A 		3.8
(0.3)
A 		4.8
(3)
A 		3.1
(-1.6)
A 		3.8
(0.3)
A 		2
avr 3.4
(-2.9) 		5.7
(-1.4) 		3.2
(-3) 		12.3
(3) 		5.3
(-1.6) 		3.7
(-2.7) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.6
(0.3)
A 		1.1
(-3)
A 		1.5
(-2.5)
A 		5.6
(3)
A 		5
B 1.5
(-2.4)
A 		6.9
(3)
A 		0.9
(-3)
A 		1.5
(-2.4)
A 		6
C 4.4
(3)
A 		0.6
(-3)
A 		1.3
(-1.9)
A 		2.3
(-0.3)
A 		4
avr 3.2
(3) 		2.9
(2.1) 		1.2
(-3) 		3.1
(2.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1
(-2.6)
A 		0.7
(-2.9)
A 		6.1
(3)
A 		3.2
(-0.2)
A 		0.6
(-3)
A 		6
B 1.4
(-1.2)
A 		3.3
(3)
A 		0.6
(-3)
A 		2.1
(0.3)
A 		0.9
(-2.3)
A 		1.8
(-0.3)
A 		3
C 1
(-3)
A 		1.3
(3)
A 		1
(-3)
A 		1
(-3)
A 		1
(-3)
A 		1.3
(3)
A 		0
avr 1
(-2.5) 		1.9
(-0.1) 		0.8
(-3) 		3.1
(3) 		1.7
(-0.7) 		1.2
(-2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185349_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5438
Sequence Type Exemplar sequence
Representative Public ID F22E5.14 NCBI
Target Description F22E5.14 /REP_DB=WormBase Gene ID /WP=CE09566 /TR=O16712 /GB=AAB66177.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062071
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F22E5.14 ENSEMBL cdna:pseudogene chromosome:CEL140:II:2652842:2654465:-1 gene:F22E5.14 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062071 1/11 Cross Hyb Matching Probes A 
ZC239.19 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3204194-3205537(+) 91.47 91.47
chrII:2653044-2653976(-) 100.0 100.0
Public Domain and Genome References
Ensembl F22E5.14
Sequence
Target Sequence 
>C. ELEGANS:185349_AT
agaagtgtcaatggcacataccccccaatacatattcgaattctcaaagctaaaaaactt
tgcaatttacaagtggagcttctggtttatattttcttcaattgtcgggacattcggaat
tgtcttatattttctcatatgcaattttgcaacttgtgacatgttgcaaatgctcaaaga
ggtccaactcaaagtttccaatcaaaattacaaacgtcacaggtcagttttaacgacact
tattgctcagtcgttaggctcttctgtaattgtggttccggcctgcgctttaatggtttt
cggcctactcgagctcggatacgatcaactaatatgtgaaataatatgtatggtgttttc
actgcgtggttctattcattcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGTGTCAATGGCACATACCCCC 343 75 96 Antisense
CATACCCCCCAATACATATTCGAAT 19 215 112 Antisense
TACAAGTGGAGCTTCTGGTTTATAT 359 641 163 Antisense
ATTTTCTTCAATTGTCGGGACATTC 343 15 186 Antisense
ATTGTCTTATATTTTCTCATATGCA 394 5 214 Antisense
GCAATTTTGCAACTTGTGACATGTT 330 323 236 Antisense
GAGGTCCAACTCAAAGTTTCCAATC 294 401 274 Antisense
CTCAGTCGTTAGGCTCTTCTGTAAT 262 229 341 Antisense
CTTCTGTAATTGTGGTTCCGGCCTG 22 13 356 Antisense
ATGTATGGTGTTTTCACTGCGTGGT 645 47 441 Antisense
CACTGCGTGGTTCTATTCATTCGAT 31 199 455 Antisense
Sequence Source Affymetrix Proprietary Database