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[185348_at]

Description Y75B8A.29 /REP_DB=WormBase Gene ID /WP=CE23040 /TR=Q9XW80 /GB=CAA22089.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 71      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 62      6grp_total > 70      4grp_total > 02      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 950
1 2 3 4 range
A 264.9
(-3)
P 		303.6
(-2.7)
P 		267.8
(-3)
P 		1164.5
(3)
P 		900
B 341.3
(-2.9)
P 		331.3
(-3)
P 		344.3
(-2.9)
P 		1072
(3)
P 		741
C 285.1
(-2.5)
P 		215
(-3)
P 		346.9
(-2.1)
P 		1101.9
(3)
P 		887
avr 297.1
(-2.9) 		283.3
(-3) 		319.7
(-2.7) 		1112.8
(3) 		830

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 500
1 2 3 4 5 6 range
A 297
(-3)
P 		438.2
(-1.3)
P 		493.4
(-0.6)
P 		789
(3)
P 		366.4
(-2.2)
P 		301.9
(-2.9)
P 		492
B 357.2
(-3)
P 		400
(-2)
P 		622.6
(3)
P 		581.9
(2.1)
P 		481.9
(-0.2)
P 		412.1
(-1.8)
P 		265
C 289.3
(-3)
P 		441.6
(-0.5)
P 		492.5
(0.4)
P 		651.3
(3)
P 		428.9
(-0.7)
P 		379.5
(-1.5)
P 		362
avr 314.5
(-3) 		426.6
(-1.1) 		536.2
(0.7) 		674.1
(3) 		425.7
(-1.1) 		364.5
(-2.2) 		360
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 96.4
(-1.3)
P 		65.9
(-3)
P 		70
(-2.8)
P 		170.5
(3)
P 		105
B 108.9
(-1.8)
P 		81.8
(-2.9)
P 		79.8
(-3)
P 		228.5
(3)
P 		149
C 94.4
(-1.4)
P 		61.8
(-3)
P 		120.9
(-0.1)
P 		185.8
(3)
P 		124
avr 99.9
(-1.6) 		69.8
(-3) 		90.2
(-2) 		194.9
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 54.7
(-3)
P 		155.8
(1.2)
P 		107.5
(-0.8)
P 		200.1
(3)
P 		110.6
(-0.7)
P 		73.5
(-2.2)
P 		145
B 124.3
(-3)
P 		133.2
(-2.3)
P 		151.2
(-0.7)
P 		154.1
(-0.5)
P 		195.8
(3)
P 		153.7
(-0.5)
P 		72
C 107.2
(-3)
P 		134.7
(2.2)
P 		125.3
(0.4)
P 		131
(1.5)
P 		138.8
(3)
P 		127
(0.8)
P 		32
avr 95.4
(-3) 		141.2
(1.1) 		128
(-0) 		161.7
(3) 		148.4
(1.8) 		118.1
(-0.9) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185348_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7401
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.29 NCBI
Target Description Y75B8A.29 /REP_DB=WormBase Gene ID /WP=CE23040 /TR=Q9XW80 /GB=CAA22089.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067200(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067200 NCBI Caenorhabditis elegans Y75B8A.29 (Y75B8A.29) mRNA, complete cds. 11/11 None
SNAP00000020096 ENSEMBL cdna:SNAP chromosome:CEL140:III:12329340:12335468:1 11/11 None
GENEFINDER00000020176 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12329340:12332137:1 11/11 None
Y75B8A.29 ENSEMBL cdna:known chromosome:CEL140:III:12327724:12332137:1 gene:Y75B8A.29 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12329335-12332133(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.29
Entrez Gene 176655 Entrez gene
SwissProt Q9XW80 EMBL-EBI
WormBase CE23040 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22089 Hypothetical protein Y75B8A.29 [Caenorhabditis elegans] ref|NP_499601.1| Y75B8A.29 [Caenorhabditis elegans] 0.0
blast CAE66498 Hypothetical protein CBG11783 [Caenorhabditis briggsae] 3.0E-90
blast CAE66498 Hypothetical protein CBG11783 [Caenorhabditis briggsae] 4.0E-90
blast CAE65661 Hypothetical protein CBG10727 [Caenorhabditis briggsae] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:185348_AT
tttgaattttcataggctcgccagtgctcgagaagaatttgaaaaagctgctgaagacct
acgtctaaaaaacggagtaattgggactttaggttcccgaaaaatccgagcaaagcagca
aatggagtggagacagcatttgtatcaaatatctgcacatgaacatgagcatcatcgtga
gacaaaacttgccgagttggcagacgaatatgttaagcaaacggtaccaaaagctgctcc
cctagtcacctcaattcctaaagacatgttagatcaactaattaaaaacaataaaacttt
ggatttggaagagctgtgccgttttgttgctgataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGAATTTTCATAGGCTCGCCAGT 246 665 648 Antisense
ATAGGCTCGCCAGTGCTCGAGAAGA 525 21 659 Antisense
AAAAAGCTGCTGAAGACCTACGTCT 341 129 689 Antisense
GGAGTGGAGACAGCATTTGTATCAA 555 513 771 Antisense
GCACATGAACATGAGCATCATCGTG 422 317 802 Antisense
CATCATCGTGAGACAAAACTTGCCG 205 213 817 Antisense
GCCGAGTTGGCAGACGAATATGTTA 43 285 838 Antisense
GCAAACGGTACCAAAAGCTGCTCCC 14 319 864 Antisense
CCCTAGTCACCTCAATTCCTAAAGA 205 259 887 Antisense
GGATTTGGAAGAGCTGTGCCGTTTT 358 509 948 Antisense
GCTGTGCCGTTTTGTTGCTGATAAT 284 295 960 Antisense
Sequence Source Affymetrix Proprietary Database