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[185347_at]

Description Y47H9C.11 /REP_DB=WormBase Gene ID /WP=CE25304 /TR=Q9XWD8 /GB=CAA21737.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 05      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 61.1
(-1.4)
M 		58.6
(-1.7)
A 		48.3
(-3)
A 		97.2
(3)
A 		49
B 33.6
(-3)
P 		38.3
(-2.5)
A 		50.3
(-1.1)
A 		86
(3)
P 		52
C 59.5
(2.9)
A 		6
(-3)
A 		45.3
(1.3)
A 		60.4
(3)
A 		54
avr 51.4
(-0.8) 		34.3
(-3) 		48
(-1.2) 		81.2
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 28.9
(-2.7)
A 		26.2
(-3)
A 		59.3
(0.3)
A 		68.7
(1.2)
A 		60
(0.3)
P 		86.8
(3)
P 		61
B 19.9
(-3)
A 		37.4
(-2.3)
A 		51.7
(-1.8)
A 		66.1
(-1.2)
A 		85.2
(-0.5)
P 		176.1
(3)
P 		156
C 43.9
(-3)
A 		55.8
(-2.5)
P 		57.9
(-2.4)
A 		56.9
(-2.5)
A 		92.8
(-0.9)
P 		186.8
(3)
P 		143
avr 30.9
(-3) 		39.8
(-2.6) 		56.3
(-1.7) 		63.9
(-1.3) 		79.3
(-0.6) 		149.9
(3) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 22.3
(3)
M 		12.7
(-2.9)
A 		12.6
(-3)
A 		14.2
(-2)
A 		10
B 10.7
(-2.2)
P 		9.5
(-3)
A 		11.7
(-1.5)
A 		18.3
(3)
P 		9
C 19.7
(3)
A 		1.7
(-3)
A 		15.8
(1.7)
A 		10.2
(-0.2)
A 		18
avr 17.6
(3) 		8
(-3) 		13.4
(0.4) 		14.2
(0.9) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 5.3
(-3)
A 		9.3
(-1.5)
A 		12.9
(-0.1)
A 		17.4
(1.6)
A 		18.1
(1.9)
P 		21.1
(3)
P 		16
B 6.9
(-3)
A 		12.5
(-2.4)
A 		12.6
(-2.4)
A 		17.5
(-1.9)
A 		34.6
(-0.2)
P 		65.7
(3)
P 		59
C 16.3
(-2.4)
A 		17
(-2.3)
P 		14.7
(-2.6)
A 		11.4
(-3)
A 		30
(-0.8)
P 		62.5
(3)
P 		51
avr 9.5
(-3) 		12.9
(-2.5) 		13.4
(-2.4) 		15.4
(-2.1) 		27.6
(-0.3) 		49.8
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185347_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2045
Sequence Type Exemplar sequence
Representative Public ID Y47H9C.11 NCBI
Target Description Y47H9C.11 /REP_DB=WormBase Gene ID /WP=CE25304 /TR=Q9XWD8 /GB=CAA21737.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060619(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060619 NCBI Caenorhabditis elegans Y47H9C.11 (Y47H9C.11) mRNA, complete cds. 9/11 None
Y47H9C.11 ENSEMBL cdna:known chromosome:CEL140:I:11911856:11913270:1 gene:Y47H9C.11 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036891 5/11 Cross Hyb Matching Probes None
GENEFINDER00000036902 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11911786-11913201(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47H9C.11
Entrez Gene 190002 Entrez gene
SwissProt Q9XWD8 EMBL-EBI
WormBase CE32263 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21737 Hypothetical protein Y47H9C.11 [Caenorhabditis elegans] ref|NP_493020.2| Y47H9C.11 [Caenorhabditis elegans] 0.0
blast CAA21741 Hypothetical protein Y47H9C.10 [Caenorhabditis elegans] ref|NP_493019.2| Y47H9C.10 [Caenorhabditis elegans] 3.0E-57
blast CAB16478 Hypothetical protein Y45F10C.3 [Caenorhabditis elegans] ref|NP_502641.1| Y45F10C.3 [Caenorhabditis elegans] 2.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-5
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-9
Sequence
Target Sequence 
>C. ELEGANS:185347_AT
gatgttcttatttttgcgtgttcagttaaacagcgtccgaaaattctcgatcggaatgtt
aaaacctcatgatgcgcaatggatgttctttcgcttcaagccaagagttctcgaggaaat
tgaaattcgacatttgactgtcaaagacacagaatttgacgatgatgaaccgctcaccga
gctcgagcactggcagaaagcgaaaaaaatggatgattcgattcattttccaattgagac
gttgtcgcatttttcgcatttcgagattcgtttgaagaaattcacgattcaagatgcaga
gaagatcagagatatcgtccagaattccccttcttttcaatccggaatcgtcagaagcca
catcaaaaagccctaccaatttgtgaagattttcaaccgaaacgttgcacaacaaagtgg
ctcaatcatctataaaacaatgggatctcgcttcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTTCTTATTTTTGCGTGTTCAG 688 409 678 Antisense
GCGTGTTCAGTTAAACAGCGTCCGA 663 291 693 Antisense
AACAGCGTCCGAAAATTCTCGATCG 8 135 706 Antisense
CGCAATGGATGTTCTTTCGCTTCAA 572 253 752 Antisense
CGCTTCAAGCCAAGAGTTCTCGAGG 314 253 769 Antisense
TTGACGATGATGAACCGCTCACCGA 488 703 833 Antisense
GACGTTGTCGCATTTTTCGCATTTC 284 379 915 Antisense
CAGAGATATCGTCCAGAATTCCCCT 691 205 984 Antisense
AATCCGGAATCGTCAGAAGCCACAT 222 167 1016 Antisense
GAAGCCACATCAAAAAGCCCTACCA 352 345 1031 Antisense
AAAACAATGGGATCTCGCTTCAAAA 532 129 1111 Antisense
Sequence Source Affymetrix Proprietary Database